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by gsheni
March 26th, 2012, 7:02 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

Based on the thread suggestions, I modeled Chain C,D. Now I want to show these as creative additions.
How would I show that?
I can show Chain E inhibiting Chain A,B. But what about Chain C,D?
Or
Should I leave out the chain C,D?
by gsheni
March 20th, 2012, 6:47 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

Why does Chain F of XIAP
http://www.pdb.org/pdb/explore/remediat ... all&page=2
Have a huge gap from 169 - 179 ?
what can i do about it if I am modeling that chain?
by gsheni
March 19th, 2012, 7:27 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

What about finding specific residues for PARP1, the on site model for states?
I have looked in google scholar and have come up empty.
by gsheni
March 19th, 2012, 4:23 am
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

I see on the rules that it says one 3”x5” note card.
What if you have more information that can fit on the notecard?
by gsheni
March 18th, 2012, 7:14 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

Thanks for the help so far everyone I was wondering, http://www.pdb.org/pdb/explore/biologyAndChemistry.do?structureId=1I3O In the Protein Details section, it shows a list of GO IDs for Chains A and C. Are those ID corresponding to amino acids, which then is corresponding to a definition? Not quite...
by gsheni
March 18th, 2012, 4:16 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

Thanks for the help so far everyone
I was wondering,
http://www.pdb.org/pdb/explore/biologyA ... ureId=1I3O
In the Protein Details section, it shows a list of GO IDs for Chains A and C.
Are those ID corresponding to amino acids, which then is corresponding to a definition?
by gsheni
March 17th, 2012, 7:03 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

I have done some heavy research and it says that there should be two zinc ions on Chain E and F?
But Phenylethylamine said there should be one?
by gsheni
February 25th, 2012, 8:26 am
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

On the regional test, one of the questions on the regional test had to do with Cys203 and Arg233.
It asked for the importance of these amino acids to XIAP.

How do you deal with these questions, what commands do you do?
I know they are bound to come up during states.
by gsheni
February 23rd, 2012, 9:40 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

um, do these commands restrict *a or *b backbone 300 that should set up to see what the final protein should look like, to model each protein individually use this restrict*a backbone 300 ////////// restrict*b backbone 300 ///////// For the creative additions, just look on the site provided and do s...
by gsheni
February 12th, 2012, 5:14 pm
Forum: 2012 Lab Events
Topic: Protein Modeling C
Replies: 405
Views: 64306

Re: Protein Modeling C

Thank You for the answers everyone, 1i3o.pdb What exactly is the helix like structure shown in this file? Also, is this information correct???? The main gene changed is the spliced mRNA making the XIAP protein. This is because at UGC (Cysteine), changes to UAU (Tyrosine), THE MUTATION . This causes ...

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