Search found 5 matches

RETURN_TO_SEARCH_ADV

by nervoussenior1
September 8th, 2018, 12:22 am
Forum: 2019 Lab Events
Topic: Protein Modeling C
Replies: 272
Views: 30185

Re: Protein Modeling C

This would be correct; the required segment of protein should only be one chain. Except the problem is that when I restrict to chain B, the chain starts at residue 4 not 1..... so I’m sort of confused. I don’t know enough about JMOL to know why that’s happening :( The PDB file is a bit wonky. If yo...
by nervoussenior1
September 7th, 2018, 9:19 am
Forum: 2019 Lab Events
Topic: Protein Modeling C
Replies: 272
Views: 30185

Re: Protein Modeling C

in the rules it just said residue 1-85? Like on the rcsb website it says that chain B is the protein and chain A C D are nucleic acids/hybrids. And the description says to model residues 1-85 of the PROTEIN, so I just assumed that we restrict it to B. I may be wrong because it's my first time doing...
by nervoussenior1
September 6th, 2018, 6:47 pm
Forum: 2019 Lab Events
Topic: Protein Modeling C
Replies: 272
Views: 30185

Re: Protein Modeling C

Hm When i played around, i got 5 sheets. I think we have to restrict the chain to B (?). They still haven't updated the prebuild link that's on the event description. in the rules it just said residue 1-85? Like on the rcsb website it says that chain B is the protein and chain A C D are nucleic aci...
by nervoussenior1
September 6th, 2018, 6:46 pm
Forum: 2019 Lab Events
Topic: Protein Modeling C
Replies: 272
Views: 30185

Re: Protein Modeling C

Hm When i played around, i got 5 sheets. I think we have to restrict the chain to B (?). They still haven't updated the prebuild link that's on the event description. in the rules it just said residue 1-85? Like on the rcsb website it says that chain B is the protein and chain A C D are nucleic aci...
by nervoussenior1
September 6th, 2018, 1:05 pm
Forum: 2019 Lab Events
Topic: Protein Modeling C
Replies: 272
Views: 30185

Re: Protein Modeling C

Only first day after rules come out and I already have questions.. :roll: so here they come: 1. In Jmol if I enter "restrict 1-85" I get around 4 distinct backbones. Is this correct? 2. How should I research and find which secondary structures are important to the function of the protein? and lastl...

RETURN_TO_SEARCH_ADV