Search found 5 matches

by exla23
February 10th, 2020, 8:01 pm
Forum: Protein Modeling C
Topic: Protein Modeling C
Replies: 162
Views: 47366

Re: Protein Modeling C

Does anyone know how to display ions in Jmol? For example the central zinc atom in APOBEC3A? I came across a question on a test that asked the distance between the central iron atom and a proximal histidine at residue 93 in protein 1mbn.pdb. I tried commands such as select iron and select _fe and d...
by exla23
January 19th, 2020, 12:09 pm
Forum: Protein Modeling C
Topic: Protein Modeling C
Replies: 162
Views: 47366

Re: Protein Modeling C

Hey so for people prepping the Nats build for invitationals like MIT, was wondering what you guys were thinking/doing about BE4 seeing as it seems to include APOBEC1 rather than APOBEC3A (5keg) in it's sequence. is there a difference? structure might be the same/similar enough They’re very similar ...
by exla23
December 9th, 2019, 8:20 am
Forum: Protein Modeling C
Topic: Protein Modeling C
Replies: 162
Views: 47366

Re: Protein Modeling C

MacintoshJosh wrote: December 9th, 2019, 5:48 am How would one find the amount of hydrogen bonds in a protein structure on Jmol? I try 'hbonds on' but nothing happens.
Try using ‘calculate hbonds’ instead.
by exla23
December 4th, 2019, 2:15 pm
Forum: Protein Modeling C
Topic: Protein Modeling C
Replies: 162
Views: 47366

Re: Protein Modeling C

Could anyone explain what is expected for the nationals specific addition to the prebuild? My partners and I were confused as to what is actually meant by a "schematic representation" as it says in the rules for the fusion protein model.
by exla23
May 27th, 2019, 7:02 pm
Forum: 2019 Nationals
Topic: Who's going to Nationals? // 2019 Edition
Replies: 92
Views: 30867

Re: Who's going to Nationals? // 2019 Edition

Division C; Boca Raton Community High School; Florida; Chemistry Lab, Experimental Design, Fermi Questions, and Protein Modeling.

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