Protein Modeling C

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Re: Protein Modeling C

Post by eagerlearner102 » October 4th, 2019, 11:06 am

Do any of you know how to download JMOL on the computer? I tried but I get a folder of applet files that I don't know which to click on. I thought it would be downloaded as an application on the computer.
2019:Fermi Questions, Protein Modeling, Sounds of Music
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Re: Protein Modeling C

Post by MacintoshJosh » October 4th, 2019, 3:45 pm

Do any of you know how to download JMOL on the computer? I tried but I get a folder of applet files that I don't know which to click on. I thought it would be downloaded as an application on the computer.
1) First, go to the sourceforge website to download Jmol - https://sourceforge.net/projects/jmol/f ... urce=files (Clicking on this will automatically start the download)

2) Next, find what you just downloaded and search for an Executable Jar File called "Jmol". This is the only thing you need to keep in the entire list of files and documents, you can delete everything else.

3) Create a folder in your desktop and move this Executable Jar File called "Jmol" into the folder.

If you want to load proteins in Jmol, you need to download the "PDB Format" of the protein located on the right side(blue drop down button called "Download Files") on the PDB website of that protein. After downloading the PDB Format, move it into the same folder that you created in the desktop that contains "Jmol".

Whenever you want to open Jmol, you have to open the folder in the desktop and click on the "Jmol" file. In order to load proteins: Right click in Jmol -> File -> Load -> Open local file -> [Your protein located in the file]
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Re: Protein Modeling C

Post by AlfWeg » October 4th, 2019, 5:57 pm

MacintoshJosh wrote:
October 4th, 2019, 3:45 pm
2) Next, find what you just downloaded and search for an Executable Jar File called "Jmol". This is the only thing you need to keep in the entire list of files and documents, you can delete everything else.
Don't you have to have Java downloaded for this?
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Re: Protein Modeling C

Post by huppada » October 6th, 2019, 9:05 am

AlfWeg wrote:
October 4th, 2019, 5:57 pm
MacintoshJosh wrote:
October 4th, 2019, 3:45 pm
2) Next, find what you just downloaded and search for an Executable Jar File called "Jmol". This is the only thing you need to keep in the entire list of files and documents, you can delete everything else.
Don't you have to have Java downloaded for this?
Yep
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Re: Protein Modeling C

Post by huppada » October 6th, 2019, 9:05 am

So we should be making our pre-build according to what CBM says, not the current rules right?
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Re: Protein Modeling C

Post by eagerlearner102 » October 10th, 2019, 6:32 am

2019:Fermi Questions, Protein Modeling, Sounds of Music
2020: Designer Genes, Protein Modeling, Ping Pong Parachute
2021: Chem Lab, Experimental Design, Protein Modeling

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Re: Protein Modeling C

Post by eagerlearner102 » October 10th, 2019, 6:33 am

Do your schools buy the online test packets from SOINC? How helpful are they? How different are the tests from the ones you can find online (invitationals)?
2019:Fermi Questions, Protein Modeling, Sounds of Music
2020: Designer Genes, Protein Modeling, Ping Pong Parachute
2021: Chem Lab, Experimental Design, Protein Modeling

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Re: Protein Modeling C

Post by eagerlearner102 » October 10th, 2019, 7:11 am

MacintoshJosh wrote:
October 4th, 2019, 3:45 pm
Do any of you know how to download JMOL on the computer? I tried but I get a folder of applet files that I don't know which to click on. I thought it would be downloaded as an application on the computer.
1) First, go to the sourceforge website to download Jmol - https://sourceforge.net/projects/jmol/f ... urce=files (Clicking on this will automatically start the download)

2) Next, find what you just downloaded and search for an Executable Jar File called "Jmol". This is the only thing you need to keep in the entire list of files and documents, you can delete everything else.

3) Create a folder in your desktop and move this Executable Jar File called "Jmol" into the folder.

If you want to load proteins in Jmol, you need to download the "PDB Format" of the protein located on the right side(blue drop down button called "Download Files") on the PDB website of that protein. After downloading the PDB Format, move it into the same folder that you created in the desktop that contains "Jmol".

Whenever you want to open Jmol, you have to open the folder in the desktop and click on the "Jmol" file. In order to load proteins: Right click in Jmol -> File -> Load -> Open local file -> [Your protein located in the file]
Thank you so much! I think it is more of a minor technical issue that everyone has. Mac likes to say "unidentified developer" so I went to security settings.
2019:Fermi Questions, Protein Modeling, Sounds of Music
2020: Designer Genes, Protein Modeling, Ping Pong Parachute
2021: Chem Lab, Experimental Design, Protein Modeling

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Re: Protein Modeling C

Post by ericlepanda » October 20th, 2019, 8:14 am

ntso
quack quack

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Re: Protein Modeling C

Post by eagerlearner102 » October 28th, 2019, 11:32 am

I watched that. it was pretty good.
2019:Fermi Questions, Protein Modeling, Sounds of Music
2020: Designer Genes, Protein Modeling, Ping Pong Parachute
2021: Chem Lab, Experimental Design, Protein Modeling

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