Difference between revisions of "Disease Detectives"
m (→Types of Carriers/Vectors: formatting) 
m (Made some cosmetic changes.) 

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 WebsiteC = https://www.soinc.org/diseasedetectivesc   WebsiteC = https://www.soinc.org/diseasedetectivesc  
}}  }}  
−  '''Disease Detectives''' is an event in [[Division B]] and [[Division C]] that focuses on epidemiology, the study of diseases and how they spread.  +  '''Disease Detectives''' is an event in [[Division B]] and [[Division C]] that focuses on epidemiology, the study of diseases and how they spread. 
−  ==Focus Topics==  +  == Focus Topics == 
Disease Detectives rotates between topics every two years. Typically the topic has a minor impact on the content of the event, usually only affecting the specific types of diseases used in problems. However, now Disease Detective includes disease from all topics. Therefore, there is no given one.  Disease Detectives rotates between topics every two years. Typically the topic has a minor impact on the content of the event, usually only affecting the specific types of diseases used in problems. However, now Disease Detective includes disease from all topics. Therefore, there is no given one.  
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−  ==Event Format==  +  == Event Format == 
The ''Foodborne Illness'' focus covers areas that include:  The ''Foodborne Illness'' focus covers areas that include:  
−  *Historical foodborne illness outbreaks  +  * Historical foodborne illness outbreaks 
−  *Characteristics of different foodborne illnesses (salmonella, botulism, etc.)  +  * Characteristics of different foodborne illnesses (salmonella, botulism, etc.) 
−  *Safe cooking temperature for different foods  +  * Safe cooking temperature for different foods 
−  *Prevention techniques for stopping foodborne illness transmission  +  * Prevention techniques for stopping foodborne illness transmission 
−  *Food preparation steps and safety  +  * Food preparation steps and safety 
−  *Pulsenet and other national surveillance techniques for foodborne illnesses  +  * Pulsenet and other national surveillance techniques for foodborne illnesses 
The ''Population Growth'' focus covers areas that include:  The ''Population Growth'' focus covers areas that include:  
−  *Water Quality, Water Pollution, Water Demands  +  * Water Quality, Water Pollution, Water Demands 
−  *Sanitation Needs  +  * Sanitation Needs 
−  *Growth of Slums and Household Environment  +  * Growth of Slums and Household Environment 
−  *Environmental Degradation  +  * Environmental Degradation 
−  *Air Pollution  +  * Air Pollution 
−  *Infectious Disease Outbreaks  +  * Infectious Disease Outbreaks 
−  *Rapid Spread of Disease via Public Transportation and Air Travel  +  * Rapid Spread of Disease via Public Transportation and Air Travel 
−  *Food Quality and Food Contamination  +  * Food Quality and Food Contamination 
−  *Lack of food in poor nations vs. unhealthy fast food and drinks in technological societies  +  * Lack of food in poor nations vs. unhealthy fast food and drinks in technological societies 
−  *Availability of health care for the poor and the aged  +  * Availability of health care for the poor and the aged 
−  *People moving into uninhabited areas  +  * People moving into uninhabited areas 
−  *New pathogens, such as Lyme disease and Ebola  +  * New pathogens, such as Lyme disease and Ebola 
−  ==The Basics==  +  == The Basics == 
−  ===Epidemiology===  +  === Epidemiology === 
Epidemiology is the study of distribution and determinants of healthrelated states in specified populations, and the application of this to control health problems. There are four basic reasons for why disease detectives study and research outbreaks and epidemics. These reasons are: Control and Prevention, Research Opportunities, Training, and Legal Concerns.  Epidemiology is the study of distribution and determinants of healthrelated states in specified populations, and the application of this to control health problems. There are four basic reasons for why disease detectives study and research outbreaks and epidemics. These reasons are: Control and Prevention, Research Opportunities, Training, and Legal Concerns.  
−  ====Two Basic Types of Epidemiology====  +  ==== Two Basic Types of Epidemiology ==== 
:'''Classical Epidemiology'''  population oriented, studies community origins of health problems related to nutrition, environment, human behavior, and the psychological, social, and spiritual state of a population. The event is more aimed towards this type of epidemiology.  :'''Classical Epidemiology'''  population oriented, studies community origins of health problems related to nutrition, environment, human behavior, and the psychological, social, and spiritual state of a population. The event is more aimed towards this type of epidemiology.  
−  :'''Clinical Epidemiology'''  studies patients in health care settings in order to improve the diagnosis and treatment of various diseases and the prognosis for patients already affected by a disease. These can be further divided into:  +  :'''Clinical Epidemiology'''  studies patients in health care settings in order to improve the diagnosis and treatment of various diseases and the prognosis for patients already affected by a disease. These can be further divided into: 
−  ::Infectious Disease Epidemiology  heavily dependent on laboratory support  +  ::Infectious Disease Epidemiology  heavily dependent on laboratory support 
::Chronic Disease Epidemiology  dependent on complex sampling and statistical methods  ::Chronic Disease Epidemiology  dependent on complex sampling and statistical methods  
−  There are all sorts of classification systems for epi and the above certainly are examples. One could add research epi vs applied epi to the above list.  +  There are all sorts of classification systems for epi and the above certainly are examples. One could add research epi vs applied epi to the above list. However probably the most fundamental and common system is Descriptive epi (e.g. person, place and time) vs Analytic epi (hypothesis testing  study design). 
−  ===Basic Epidemiology Terms===  +  === Basic Epidemiology Terms === 
:'''Cluster'''  An aggregation of cases over a particular period closely grouped in time and space, ''regardless of whether the number is more than the expected number''  :'''Cluster'''  An aggregation of cases over a particular period closely grouped in time and space, ''regardless of whether the number is more than the expected number''  
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:'''Morbidity'''  Rate of disease in a population.  :'''Morbidity'''  Rate of disease in a population.  
:'''Mortality'''  Rate of death in a population.  :'''Mortality'''  Rate of death in a population.  
−  :'''Outbreak'''  More cases of a particular disease than expected in a given area or among a specialized group of people over a particular period of time.  +  :'''Outbreak'''  More cases of a particular disease than expected in a given area or among a specialized group of people over a particular period of time. 
−  :'''Pandemic'''  An ''epidemic'' occurring over several countries or continents and affecting a large ''proportion'' of the population.  +  :'''Pandemic'''  An ''epidemic'' occurring over several countries or continents and affecting a large ''proportion'' of the population. 
:'''Plague'''  A serious, potentially lifethreatening infectious disease that is usually transmitted to humans by the bites of rodent fleas. It was one of the scourges of our early history. There are three major forms of the disease: bubonic, septicemic, and pneumonic.  :'''Plague'''  A serious, potentially lifethreatening infectious disease that is usually transmitted to humans by the bites of rodent fleas. It was one of the scourges of our early history. There are three major forms of the disease: bubonic, septicemic, and pneumonic.  
:'''Nosocomial Disease'''  An infection that is acquired in a hospital.  :'''Nosocomial Disease'''  An infection that is acquired in a hospital.  
−  :'''Risk'''  The probability that an individual will be affected by, or die from, an illness or injury within a stated time or age span.  +  :'''Risk'''  The probability that an individual will be affected by, or die from, an illness or injury within a stated time or age span. Risk of illness is generally considered to be the same as the Incidence (see below) and the terms are used interchangeably. Agespan is not usually a consideration in this usage. Risk of death from a particular illness is expressed as the Case Fatality Rate (Number deaths due to a disease/Number with the disease) or the Causespecific Mortality Rate (Number deaths due to a disease/Number in population). Age span is a more common consideration in this last usage. 
:'''Surveillance'''  The systematic and ongoing collection, analysis, interpretation, and dissemination of health data. The purpose of public health surveillance is to gain knowledge of the patterns of disease, injury, and other health problems in a community so that we can work towards their prevention and control.  :'''Surveillance'''  The systematic and ongoing collection, analysis, interpretation, and dissemination of health data. The purpose of public health surveillance is to gain knowledge of the patterns of disease, injury, and other health problems in a community so that we can work towards their prevention and control.  
:'''Vector'''  An animal that transmits disease. For example, a mosquito is a vector for malaria.  :'''Vector'''  An animal that transmits disease. For example, a mosquito is a vector for malaria.  
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:'''Asymptomatic'''  Showing no signs or symptoms, although can be carrier of disease.  :'''Asymptomatic'''  Showing no signs or symptoms, although can be carrier of disease.  
−  ===Incidence, Prevalence, and Duration===  +  === Incidence, Prevalence, and Duration === 
−  The '''incidence''' of an illness is the number of ''new'' instances of disease in a population over a given time period. It is expressed as "X cases/Y population/ Z time".  +  The '''incidence''' of an illness is the number of ''new'' instances of disease in a population over a given time period. It is expressed as "X cases/Y population/ Z time". The '''prevalence''' of an illness is the number of affected persons in the population at any given point in time. It is expressed as "X cases/Y population". There are two major ways in which prevalence is measured: '''period prevalence''' and '''point prevalence.''' Think of point prevalence as a snapshot of the population and its rate of a certain disease at a point in time while period prevalence tracks the prevalence over a certain duration. Note the only difference is that incidence (I) includes time while prevalence (P) does not. Time (D) reflects the duration of the illness or condition. If two conditions have the same incidence in a population, the one with the longer duration will have the greater prevalence. Importantly, [math]P = I*D[/math], so with two of the variables, it is possible to solve for the third. 
−  ===Thirteen Steps to Investigating an Outbreak===  +  === Thirteen Steps to Investigating an Outbreak === 
Remember that this is a conceptual order, so steps have to be done simultaneously!  Remember that this is a conceptual order, so steps have to be done simultaneously!  
−  #Prepare for field work  +  # Prepare for field work 
−  #Establish the Existence of an Outbreak  Consider Severity, Potential for Spread, Public Concern, and Availability of Resources  +  # Establish the Existence of an Outbreak  Consider Severity, Potential for Spread, Public Concern, and Availability of Resources 
−  #Verify the Diagnosis  +  # Verify the Diagnosis 
−  #Construct a Working Case Definition  +  # Construct a Working Case Definition 
−  #Find Cases Systematically and Record Information  +  # Find Cases Systematically and Record Information 
−  #Describe and Orient the Data in Terms of '''Person, Place, and Time'''  Descriptive Epidemiology  +  # Describe and Orient the Data in Terms of '''Person, Place, and Time'''  Descriptive Epidemiology 
−  #Develop Hypotheses (Agent/Host/Environment Triad) = Chain of Transmission  +  # Develop Hypotheses (Agent/Host/Environment Triad) = Chain of Transmission 
−  #Evaluate Hypotheses  Analytical Studies (MUST Have a Control Group)  +  # Evaluate Hypotheses  Analytical Studies (MUST Have a Control Group) 
−  #Refine Hypotheses if Necessary  +  # Refine Hypotheses if Necessary 
−  #Compare and Reconcile with Laboratory and/or Environmental Studies  +  # Compare and Reconcile with Laboratory and/or Environmental Studies 
−  #Implement Control and Prevention Measures (ASAP!)  +  # Implement Control and Prevention Measures (ASAP!) 
−  #Initiate or Maintain Surveillance  +  # Initiate or Maintain Surveillance 
−  #Communicate Findings  +  # Communicate Findings 
−  [https://wiki.ecdc.europa.eu/fem/w/wiki/671.aspx  +  [https://wiki.ecdc.europa.eu/fem/w/wiki/671.aspx Ten Steps to Outbreak Investigation  Explanation of Steps] 
−  ===Five Step Process for Surveillance===  +  === Five Step Process for Surveillance === 
−  #Identify, define, and measure the health problem of interest  +  # Identify, define, and measure the health problem of interest 
−  #Collect and compile data about the problem (and if possible, factors that influence it)  +  # Collect and compile data about the problem (and if possible, factors that influence it) 
−  #Analyze and interpret these data  +  # Analyze and interpret these data 
−  #Provide these data and their interpretation to those responsible for controlling the health problem  +  # Provide these data and their interpretation to those responsible for controlling the health problem 
−  #Monitor and periodically evaluate the usefulness and quality of surveillance to improve it for future use. Note that surveillance of a problem does not include actions to control the problem  +  # Monitor and periodically evaluate the usefulness and quality of surveillance to improve it for future use. Note that surveillance of a problem does not include actions to control the problem 
[https://www.cdc.gov/ophss/csels/dsepd/ss1978/lesson5/section1.html Public Health Surveillance  CDC]  [https://www.cdc.gov/ophss/csels/dsepd/ss1978/lesson5/section1.html Public Health Surveillance  CDC]  
−  ==How to prove ''x'' caused ''y'', or Causation==  +  == How to prove ''x'' caused ''y'', or Causation == 
−  ===Hill's Criteria for Cause===  +  === Hill's Criteria for Cause === 
Nine criteria must be met to establish a causeandeffect relationship. This is commonly known as ''Hill's Criteria for Causation'':  Nine criteria must be met to establish a causeandeffect relationship. This is commonly known as ''Hill's Criteria for Causation'':  
−  #Strength of Association  relationship is clear and risk estimate is high  +  # Strength of Association  relationship is clear and risk estimate is high 
−  #Consistency  observation of association must be repeatable in different populations at different times  +  # Consistency  observation of association must be repeatable in different populations at different times 
−  #Specificity  a single cause produces a specific effect  +  # Specificity  a single cause produces a specific effect 
−  #Alternative Explanations  consideration of multiple hypotheses before making conclusions about whether an association is causal or not  +  # Alternative Explanations  consideration of multiple hypotheses before making conclusions about whether an association is causal or not 
−  #Temporality  cause/exposure must precede the effect/outcome  +  # Temporality  cause/exposure must precede the effect/outcome 
−  #DoseResponse Relationship  an increasing amount of exposure increases the risk  +  # DoseResponse Relationship  an increasing amount of exposure increases the risk 
−  #Biological Plausibility  the association agrees with currently accepted understanding of biological and pathological processes  +  # Biological Plausibility  the association agrees with currently accepted understanding of biological and pathological processes 
−  #Experimental Evidence  the condition can be altered, either prevented or accelerated, by an appropriate experimental process  +  # Experimental Evidence  the condition can be altered, either prevented or accelerated, by an appropriate experimental process 
−  #Coherence  the association should be compatible with existing theory and knowledge, including knowledge of past cases and epidemiological studies  +  # Coherence  the association should be compatible with existing theory and knowledge, including knowledge of past cases and epidemiological studies 
[http://www.drabruzzi.com/hills_criteria_of_causation.htm Hill's Criteria for Causation Explanations and History]  [http://www.drabruzzi.com/hills_criteria_of_causation.htm Hill's Criteria for Causation Explanations and History]  
−  ==Types of Carriers/Vectors==  +  == Types of Carriers/Vectors == 
:'''Convalescent'''  Humans are also capable of spreading disease following a period of illness, typically thinking themselves cured of the disease  :'''Convalescent'''  Humans are also capable of spreading disease following a period of illness, typically thinking themselves cured of the disease  
:'''Incubatory'''  When an individual transmits pathogens immediately following infection but prior to developing symptoms  :'''Incubatory'''  When an individual transmits pathogens immediately following infection but prior to developing symptoms  
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:'''Transient/Temporary'''  Someone who can transmit an infectious disease for a short amount of time  :'''Transient/Temporary'''  Someone who can transmit an infectious disease for a short amount of time  
−  ===Epidemiological Triads===  +  === Epidemiological Triads === 
−  Epidemiologists use two triads. The first is the foundation for descriptive epidemiology  +  Epidemiologists use two triads. The first is the foundation for descriptive epidemiology  '''person, place and time'''. The second is described in the next section. 
−  ====Chain of Transmission Triad====  +  ==== Chain of Transmission Triad ==== 
This is another common triad, which is an altered form of the Chain of Infection described below. It is a companion to the Epidemiological Triad. It also has three components:  This is another common triad, which is an altered form of the Chain of Infection described below. It is a companion to the Epidemiological Triad. It also has three components:  
−  #An external '''agent'''  +  # An external '''agent''' 
−  #A '''vector or fomite''' that transmits the disease  +  # A '''vector or fomite''' that transmits the disease 
−  #A susceptible '''host''' for the disease  +  # A susceptible '''host''' for the disease 
This is used to define the major points of a disease case.  This is used to define the major points of a disease case.  
−  ==Epidemiological Studies==  +  == Epidemiological Studies == 
−  ===Basic Studies===  +  === Basic Studies === 
:'''Ecological'''  comparisons of geographical locations  :'''Ecological'''  comparisons of geographical locations  
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:'''Cohort'''  compare people with and without exposures to see what happens to each  :'''Cohort'''  compare people with and without exposures to see what happens to each  
:'''Randomized Controlled Trial'''  human experiment  :'''Randomized Controlled Trial'''  human experiment  
−  :'''Quasi Experiments'''   +  :'''Quasi Experiments'''  research similarities with traditional experimental design or RCT, but lack element of random assignment to treatment/control 
−  ===Advantages and Disadvantages to Study Designs===  +  === Advantages and Disadvantages to Study Designs === 
{ class="wikitable" border="1"  { class="wikitable" border="1"  
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}  }  
−  ===2x2 Table===  +  === 2x2 Table === 
−  A table which has two columns and rows for people with or without exposure and with or without disease; shows the number of people with each characteristic.  +  A table which has two columns and rows for people with or without exposure and with or without disease; shows the number of people with each characteristic. 
{ class="wikitable" border="1"  { class="wikitable" border="1"  
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}  }  
−  Using the 2*2 Table, we can calculate the odds ratio and relative risk. These calculations allow comparisons between the control group and the group afflicted with the condition. One is the neutral value and means that there is no difference between the groups compared; when the value is greater than one it means that there has been some difference between the two groups, whether it was caused by bias, chance, or an actual relationship between the exposure and outcome is yet to be seen. The Pvalue tells us whether the results of the study can be used. The Pvalue is the measure of how confident you are that your findings are correct. You can only trust your findings to be correct if the Pvalue is less than .05.  +  Using the 2*2 Table, we can calculate the odds ratio and relative risk. These calculations allow comparisons between the control group and the group afflicted with the condition. One is the neutral value and means that there is no difference between the groups compared; when the value is greater than one it means that there has been some difference between the two groups, whether it was caused by bias, chance, or an actual relationship between the exposure and outcome is yet to be seen. The Pvalue tells us whether the results of the study can be used. The Pvalue is the measure of how confident you are that your findings are correct. You can only trust your findings to be correct if the Pvalue is less than .05. 
'''Odds Ratio'''  used in casecontrol study, [math]a \cdot d \over b \cdot c[/math]  '''Odds Ratio'''  used in casecontrol study, [math]a \cdot d \over b \cdot c[/math]  
−  '''Relative Risk'''  used in cohort study, [math]a/(a+b) \over c/(c+d)[/math]  +  '''Relative Risk'''  used in cohort study, [math]a/(a+b) \over c/(c+d)[/math] 
'''Attack Rate'''  the rate that a group experienced an outcome or illness equal to the number sick divided by the total in that group. (There should be a high attack rate in those exposed and a low attack rate in those unexposed.)  '''Attack Rate'''  the rate that a group experienced an outcome or illness equal to the number sick divided by the total in that group. (There should be a high attack rate in those exposed and a low attack rate in those unexposed.)  
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:For the unexposed: [math]\frac{c}{c+d}[/math]  :For the unexposed: [math]\frac{c}{c+d}[/math]  
−  ===Using EpiCurves===  +  === Using EpiCurves === 
An epicurve is a histogram that shows the course of an outbreak by plotting the number of cases of a condition according to the time of onset. ''EpiCurves fall into three classifications:''  An epicurve is a histogram that shows the course of an outbreak by plotting the number of cases of a condition according to the time of onset. ''EpiCurves fall into three classifications:''  
−  '''Point source''' epidemics occur when people are exposed to the same exposure over a limited, well define period of time. The shape of the curve commonly rises rapidly and contains a definite peak, followed by a gradual decline.  +  '''Point source''' epidemics occur when people are exposed to the same exposure over a limited, well define period of time. The shape of the curve commonly rises rapidly and contains a definite peak, followed by a gradual decline. 
−  [[  +  [[File:Nh_mosquito_epicurve_week53.jpg]] 
−  '''Continuous common source''' epidemics occur when the exposure to the source is prolonged over an extended period of time and may occur over more than one incubation period. The down slope of the curve may be very sharp if the common source is removed or gradual if the outbreak is allowed to exhaust itself.  +  '''Continuous common source''' epidemics occur when the exposure to the source is prolonged over an extended period of time and may occur over more than one incubation period. The down slope of the curve may be very sharp if the common source is removed or gradual if the outbreak is allowed to exhaust itself. 
−  [[  +  [[File:Co_mosquito_epicurve_week53.jpg]] 
−  '''Propagated (progressive source)''' epidemics occur when a case of disease serves later as a source of infection for subsequent cases and those subsequent cases, in turn, serve as sources for later cases. The shape of this curve usually contains a series of successively larger peaks, reflective of the increasing number of cases caused by persontoperson contact, until the pool of those susceptible is exhausted or control measures are implemented.  +  '''Propagated (progressive source)''' epidemics occur when a case of disease serves later as a source of infection for subsequent cases and those subsequent cases, in turn, serve as sources for later cases. The shape of this curve usually contains a series of successively larger peaks, reflective of the increasing number of cases caused by persontoperson contact, until the pool of those susceptible is exhausted or control measures are implemented. The distance between these peaks may be a rough indication of the incubation period of the disease. As the outbreak progresses, the peaks flatten out (think of the variance around a mean over multiple generations). 
−  [[  +  [[File:Ga_mosquito_epicurve_week53.jpg]] 
−  ===Validity of Study Results: Error and Bias===  +  === Validity of Study Results: Error and Bias === 
−  :'''Random error''' is the result of fluctuations around a true value because of the sample population. Random error can result from poorly worded questions or misunderstanding of questions. As the term implies, it is random, so it is impossible to correct.  +  :'''Random error''' is the result of fluctuations around a true value because of the sample population. Random error can result from poorly worded questions or misunderstanding of questions. As the term implies, it is random, so it is impossible to correct. However, random error can be reduced; some ways include increasing the sample size and making measurements more precise, either by using a more accurate measurement device or by taking more trials. While these techniques would decrease random error, they can also be expensive. Better measurement devices will cost more, and more trials and a larger sample size will mean more work. 
::Precision is a measure of random error that is inversely related, so increasing random error decreases precision.  ::Precision is a measure of random error that is inversely related, so increasing random error decreases precision.  
:'''Systematic error''' is any error other than random error. For example, systematic error can occur if the markings on your ruler are wider. This would make the numeric measurements less than what they actually are, making all data collected inaccurate. However, trends observed may still be preserved (shifting a line vertically preserves a line, as it is a rigid motion).  :'''Systematic error''' is any error other than random error. For example, systematic error can occur if the markings on your ruler are wider. This would make the numeric measurements less than what they actually are, making all data collected inaccurate. However, trends observed may still be preserved (shifting a line vertically preserves a line, as it is a rigid motion).  
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:'''Confounding bias''' is bias resulting from mixing effects of several factors. Unlike selection and information bias, confounding bias deals with causation and not variations in study results.  :'''Confounding bias''' is bias resulting from mixing effects of several factors. Unlike selection and information bias, confounding bias deals with causation and not variations in study results.  
−  ==Disease and Disease Transmission==  +  == Disease and Disease Transmission == 
−  ===Natural History and Spectrum of Disease===  +  === Natural History and Spectrum of Disease === 
−  [[  +  [[File:HistoryofDisease.jpg]] 
The process begins with the appropriate exposure to or accumulation of factors sufficient for the disease process to begin in a susceptible host. For an infectious disease, the exposure is a microorganism. For cancer, the exposure may be a factor that initiates the process, such as asbestos fibers or components in tobacco smoke (for lung cancer), or one that promotes the process, such as estrogen (for endometrial cancer).  The process begins with the appropriate exposure to or accumulation of factors sufficient for the disease process to begin in a susceptible host. For an infectious disease, the exposure is a microorganism. For cancer, the exposure may be a factor that initiates the process, such as asbestos fibers or components in tobacco smoke (for lung cancer), or one that promotes the process, such as estrogen (for endometrial cancer).  
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The onset of symptoms marks the transition from subclinical to clinical disease. Most diagnoses are made during the stage of clinical disease. In some people, however, the disease process may never progress to clinically apparent illness. In others, the disease process may result in illness that ranges from mild to severe or fatal. This range is called the '''spectrum of disease'''. Ultimately, the disease process ends either in recovery, disability or death.  The onset of symptoms marks the transition from subclinical to clinical disease. Most diagnoses are made during the stage of clinical disease. In some people, however, the disease process may never progress to clinically apparent illness. In others, the disease process may result in illness that ranges from mild to severe or fatal. This range is called the '''spectrum of disease'''. Ultimately, the disease process ends either in recovery, disability or death.  
−  ===Chain of Infection===  +  === Chain of Infection === 
'''Agent''' leaves '''reservoir''' through '''portal of exit''', and is conveyed by some '''mode of transmission''', and enters the appropriate '''portal of entry''' to infect a susceptible '''host'''.  '''Agent''' leaves '''reservoir''' through '''portal of exit''', and is conveyed by some '''mode of transmission''', and enters the appropriate '''portal of entry''' to infect a susceptible '''host'''.  
−  [[  +  [[File:Chainofinfection.jpg]] 
'''Agent'''  A microbial organism with the ability to cause disease.  '''Agent'''  A microbial organism with the ability to cause disease.  
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'''Reservoir'''  A place where agents can thrive and reproduce.  '''Reservoir'''  A place where agents can thrive and reproduce.  
−  '''Portal of Exit'''   +  '''Portal of Exit'''  A place of exit providing a way for an agent to leave the reservoir; the route a pathogen takes out of an infected host. Portals of exit tend to be fairly well defined. What serve as portals of exit are often not terribly surprising, at least, once something is known of how and where a pathogen replicates and enters new hosts. Respiratory infections tend to utilize the mouth and nose as portals of exit. Gastrointestinal diseases tend to exit in feces or saliva, depending on the site of replication. Sexually transmitted diseases tend to have portals of exit at the urethra or genital region. Bloodbourne diseases tend to exit via arthropods, needles, bleeding, or hyperdermic syringes. A more general portal of exit occurs when an infected animal is butchered or an infected person undergoes surgery. The three most common portals of exit are the skin, gastrointestinal tract, and respiratory tract. 
'''Mode of Transmission'''  Method of transfer by which the organism moves or is carried from one place to another; the transfer of diseasecausing microrganisms from one environment to another, particularly from an external environment to a susceptible individual. There are three general categories of transmission: contact, vehicle, and vector.  '''Mode of Transmission'''  Method of transfer by which the organism moves or is carried from one place to another; the transfer of diseasecausing microrganisms from one environment to another, particularly from an external environment to a susceptible individual. There are three general categories of transmission: contact, vehicle, and vector.  
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'''Portal of Entry'''  An opening allowing the microorganism to enter the host; the route a pathogen takes to enter a host. Just as with the portals of exit, many pathogens have preferred portals of entry. Many pathogens are not able to cause disease if their usual portal of entry is artificially bypassed. The most common portal of entry is the mucous membrane of the respiratory tract.  '''Portal of Entry'''  An opening allowing the microorganism to enter the host; the route a pathogen takes to enter a host. Just as with the portals of exit, many pathogens have preferred portals of entry. Many pathogens are not able to cause disease if their usual portal of entry is artificially bypassed. The most common portal of entry is the mucous membrane of the respiratory tract.  
−  '''Susceptible Host'''  A person who cannot resist a microorganism invading the body, multiplying, and resulting in infection.  +  '''Susceptible Host'''  A person who cannot resist a microorganism invading the body, multiplying, and resulting in infection. 
[http://www.peelregion.ca/health/discon/htmfiles/takecontrol/2011/sec2/21TheChainofInfection.pdf Chain of Infection: Diagram and Explanation]  [http://www.peelregion.ca/health/discon/htmfiles/takecontrol/2011/sec2/21TheChainofInfection.pdf Chain of Infection: Diagram and Explanation]  
−  ===Characteristics of Agents===  +  === Characteristics of Agents === 
−  #''Infectivity''  capacity to cause infection in a susceptible host  +  # ''Infectivity''  capacity to cause infection in a susceptible host 
−  #''Pathogenicity''  capacity to cause disease in a host  +  # ''Pathogenicity''  capacity to cause disease in a host 
−  #''Virulence''  severity of disease that the agent causes to host  +  # ''Virulence''  severity of disease that the agent causes to host 
−  ===Modes of Disease Transmission===  +  === Modes of Disease Transmission === 
'''Contact Transmission'''  subcategories include direct (persontoperson), indirect (fomite), or droplet.  '''Contact Transmission'''  subcategories include direct (persontoperson), indirect (fomite), or droplet.  
−  *''Direct Contact''  occurs through touching, kissing, dancing, etc . To prevent direct contact transmission, wear gloves and masks, etc.  +  * ''Direct Contact''  occurs through touching, kissing, dancing, etc . To prevent direct contact transmission, wear gloves and masks, etc. 
−  *''Indirect Contact''  occurs from a reservoir via inanimate objects called fomites. Fomites are basically almost anything an infected individual or reservoir can touch, upon which can be left a residue of contagious pathogen. Exceptions include the various inanimates ferred to as vehicles: food, air, and liquids. Typically, it is more difficult to avoid indirect contact transmission than it is to avoid direct contact transmission. A certain degree of organismal durability may be necessary to survive passage on a fomite. The best way to prevent indirect contact transmission is by avoiding contact with fomites, avoiding contact of hands with mucous membranes, especially when handling or potentially handling fomites, the use of barriers when handling fomites, and disinfecting fomites before handling.  +  * ''Indirect Contact''  occurs from a reservoir via inanimate objects called fomites. Fomites are basically almost anything an infected individual or reservoir can touch, upon which can be left a residue of contagious pathogen. Exceptions include the various inanimates ferred to as vehicles: food, air, and liquids. Typically, it is more difficult to avoid indirect contact transmission than it is to avoid direct contact transmission. A certain degree of organismal durability may be necessary to survive passage on a fomite. The best way to prevent indirect contact transmission is by avoiding contact with fomites, avoiding contact of hands with mucous membranes, especially when handling or potentially handling fomites, the use of barriers when handling fomites, and disinfecting fomites before handling. 
−  *''Droplet Transmission''  consequence of being coughed, sneezed, or spit on. To be considered droplet transmission, mucous droplets must still be traveling with the velocity imparted on it leaving the mouth. As a rule of thumb, this is up to one meter after exiting the mouth. Any further and this is considered airborne transmission. Given interaction within one meter of people is certainly more difficult to avoid droplet transmission than it is to avoid either direct or indirect transmission. Not surprisingly, it is especially respiratory diseases that are transmitted by droplets.  +  * ''Droplet Transmission''  consequence of being coughed, sneezed, or spit on. To be considered droplet transmission, mucous droplets must still be traveling with the velocity imparted on it leaving the mouth. As a rule of thumb, this is up to one meter after exiting the mouth. Any further and this is considered airborne transmission. Given interaction within one meter of people is certainly more difficult to avoid droplet transmission than it is to avoid either direct or indirect transmission. Not surprisingly, it is especially respiratory diseases that are transmitted by droplets. 
'''Vehicle Transmission'''  transmission via a medium such as food, air, and liquid, which are all routinely taken into the body, and thus serve as vehicles into the body.  '''Vehicle Transmission'''  transmission via a medium such as food, air, and liquid, which are all routinely taken into the body, and thus serve as vehicles into the body.  
−  *''Airborne Transmission''  occurs via droplets (typically mucous droplets) where droplets are liquids that remain airborne whether as aerosols (very small droplets) or associated with dust particles. An example is within airliners where economizing measures reduces the turnover of cabin air and consequently increases air recycling. Organisms which can find their way into the air and remain viable thus have repeated opportunities to infect passengers. It requires greater organismal durability that droplet transmission simply because of the length of time the microorganism is exposed to the air, before infecting a new host, is longer. Increased durability is to the effects of desiccation, exposure to sunlight, etc. This is why breathing does not typically result in the acquisition of disease.  +  * ''Airborne Transmission''  occurs via droplets (typically mucous droplets) where droplets are liquids that remain airborne whether as aerosols (very small droplets) or associated with dust particles. An example is within airliners where economizing measures reduces the turnover of cabin air and consequently increases air recycling. Organisms which can find their way into the air and remain viable thus have repeated opportunities to infect passengers. It requires greater organismal durability that droplet transmission simply because of the length of time the microorganism is exposed to the air, before infecting a new host, is longer. Increased durability is to the effects of desiccation, exposure to sunlight, etc. This is why breathing does not typically result in the acquisition of disease. 
−  *''Foodborne Transmission''  any number of pathogens are found in food and not killed during processing may be transmitted via food product. Salmonella especially tends to be part of the normal flora of chickens and consequently associated with chicken products.  +  * ''Foodborne Transmission''  any number of pathogens are found in food and not killed during processing may be transmitted via food product. Salmonella especially tends to be part of the normal flora of chickens and consequently associated with chicken products. 
−  *''Waterborne Transmission''  fecal contaminated water. Generally, this is via sewage contaminated water supplies. It is especially gastrointestinal pathogens that are present in feces and therefore which rely on this type of transmission.  +  * ''Waterborne Transmission''  fecal contaminated water. Generally, this is via sewage contaminated water supplies. It is especially gastrointestinal pathogens that are present in feces and therefore which rely on this type of transmission. 
−  '''Vector Transmission'''  no entry.  +  '''Vector Transmission'''  no entry. 
−  *''Portals of Entry to the Nervous System''  the brain is typically fairly resistant to bacterial infection. There are four common portals of entry to the nervous system. For an organism to take advantage of these routes, they must display increasingly specialized adaptations as read from first to last: parenteral, via the blood, via the lymphatic systems, and up the peripheral nerve axons. Ordering of blood and lymphatic system was arbitrary and not intended to imply that one serves as a significantly more difficult portal to take advantage of than the other.  +  * ''Portals of Entry to the Nervous System''  the brain is typically fairly resistant to bacterial infection. There are four common portals of entry to the nervous system. For an organism to take advantage of these routes, they must display increasingly specialized adaptations as read from first to last: parenteral, via the blood, via the lymphatic systems, and up the peripheral nerve axons. Ordering of blood and lymphatic system was arbitrary and not intended to imply that one serves as a significantly more difficult portal to take advantage of than the other. 
−  The scheme used by the American Public Health Association and  +  The scheme used by the American Public Health Association and CDC (Principles of Epi, 3rd edition) is a bit different. The 2 main categories are '''Direct''' and '''Indirect Transmission''' (not Contact). Direct Transmission includes '''Direct Contact''' and '''Droplet Spread'''. Examples of ''direct contact'' includes things like kissing, biting, and contact with soil containing infectious agents that penetrate the skin or enter wounds. ''Droplet spread'' is essentially an "in your face sneeze or cough". The idea is up close and immediate. 
−  Indirect Transmission includes '''Airborne''', '''Vehicles''' and '''Vectors'''.  +  Indirect Transmission includes '''Airborne''', '''Vehicles''' and '''Vectors'''. ''Airborne transmission'' involves dust or droplet nuclei (the latter are essentially little (<5 micron) particles that remain suspended in the air. Time and distance are both greater than for droplet spread (distance >68 ft). ''Vehicles'' include things like food, water, or fomites. Vehicles may passively carry pathogens or may promote growth or toxin production. ''Vectors'' are arthropods (e.g. mosquitoes, flies, lice, ticks) that spread infectious agents. If the agent multiplies or undergoes a change in life stage (as with malaria) within the vector, the vector is said to be a '''Biologic Vector. If the agent is simply carried from one place to another (think of a fly landing on feces and then a bowl of potato salad) it is a '''Mechanical Vector'''. Generally vectorborne diseases are thought of only in the context of biologic vectors. Rabies from a dog bite would be direct contact, not a vector. Note that while terms like foodborne, waterborne and zoonotic are not really included in this system  they are still valid. 
−  ===Disease Prevention===  +  === Disease Prevention === 
''For prevention strategies relating to the yearly topics, please see [[Disease Detectives#Yearly Topics]].''  ''For prevention strategies relating to the yearly topics, please see [[Disease Detectives#Yearly Topics]].''  
−  :'''Primary prevention'''  early intervention to avoid initial exposure to agent of disease preventing the process from starting  +  :'''Primary prevention'''  early intervention to avoid initial exposure to agent of disease preventing the process from starting 
−  :'''Secondary prevention'''  during the latent stage (when the disease has just begun), process of screening and instituting treatment may prevent progression to symptomatic disease  +  :'''Secondary prevention'''  during the latent stage (when the disease has just begun), process of screening and instituting treatment may prevent progression to symptomatic disease 
:'''Tertiary prevention'''  during the symptomatic stage (when the patient shows symptoms), intervention may arrest, slow, or reverse the progression of disease  :'''Tertiary prevention'''  during the symptomatic stage (when the patient shows symptoms), intervention may arrest, slow, or reverse the progression of disease  
:'''Quaternary prevention'''  set of health activities to mitigate or avoid consequences of unnecessary/excessive intervention of the health system. Social credit that legitimizes medical intervention may be damaged if doctors don't prevent unnecessary medical activity and its consequences.  :'''Quaternary prevention'''  set of health activities to mitigate or avoid consequences of unnecessary/excessive intervention of the health system. Social credit that legitimizes medical intervention may be damaged if doctors don't prevent unnecessary medical activity and its consequences.  
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In Disease Detectives scenarios, event supervisors will often ask you to brainstorm disease prevention methods. Even if you know very little about the disease, you can brainstorm ideas from the chain of infection for the disease. For example, if the chain of infection describes that a disease is comes in contact with humans through sand at the beach and enters the body through any openings (mouth, nose, etc.), a prevention method could be putting up signs at beaches reminding the public to wash their hands before consuming any food.  In Disease Detectives scenarios, event supervisors will often ask you to brainstorm disease prevention methods. Even if you know very little about the disease, you can brainstorm ideas from the chain of infection for the disease. For example, if the chain of infection describes that a disease is comes in contact with humans through sand at the beach and enters the body through any openings (mouth, nose, etc.), a prevention method could be putting up signs at beaches reminding the public to wash their hands before consuming any food.  
−  ===Immunity===  +  === Immunity === 
:'''Active Immunity''' occurs when the person is exposed to a live pathogen, develops the disease, and becomes immune as a result of the primary immune response  :'''Active Immunity''' occurs when the person is exposed to a live pathogen, develops the disease, and becomes immune as a result of the primary immune response  
:'''Passive Immunity'''shortterm immunization by the injection of antibodies, such as gamma globulin, that are not produced by the recipient's cells. Naturally acquired passive immunity occurs during pregnancy, in which certain antibodies are passed from the maternal into the fetal bloodstream.  :'''Passive Immunity'''shortterm immunization by the injection of antibodies, such as gamma globulin, that are not produced by the recipient's cells. Naturally acquired passive immunity occurs during pregnancy, in which certain antibodies are passed from the maternal into the fetal bloodstream.  
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'''Bear in mind that Disease Detectives no longer focuses on one topic; rather all topics are used in tests!'''  '''Bear in mind that Disease Detectives no longer focuses on one topic; rather all topics are used in tests!'''  
−  ===Foodborne Illness===  +  === Foodborne Illness === 
Here are lists of foodborne illnesses, and other important information regarding foodborne illnesses: [https://www.cdc.gov/foodsafety/diseases/index.html List] '''You should know that this year, ''specific'' diseases are not included in tests and competitions!'''  Here are lists of foodborne illnesses, and other important information regarding foodborne illnesses: [https://www.cdc.gov/foodsafety/diseases/index.html List] '''You should know that this year, ''specific'' diseases are not included in tests and competitions!'''  
−  ====FAT TOM====  +  ==== FAT TOM ==== 
Is a device to describe the six favorable conditions required for the growth of foodborne pathogens. It is an acronym for '''food, acidity, time, temperature, oxygen, and moisture.'''  Is a device to describe the six favorable conditions required for the growth of foodborne pathogens. It is an acronym for '''food, acidity, time, temperature, oxygen, and moisture.'''  
{class="wikitable"  {class="wikitable"  
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!T  !T  
Temperature  Temperature  
−  Foodborne pathogens grow best in temperatures between 41 to 135 °F (5 to 57 °C), a range referred to as the temperature danger zone (TDZ). They thrive in temperatures that are between 70 to 104 °F (21 to 40 °C).  +  Foodborne pathogens grow best in temperatures between 41 to 135 °F (5 to 57 °C), a range referred to as the temperature danger zone (TDZ). They thrive in temperatures that are between 70 to 104 °F (21 to 40 °C). 
    
!O  !O  
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}  }  
−  ====Prevention====  +  ==== Prevention ==== 
For Food Borne Illnesses, prevention tactics include:  For Food Borne Illnesses, prevention tactics include:  
−  *Cook meat, poultry, and eggs thoroughly.  +  * Cook meat, poultry, and eggs thoroughly. 
−  *Don't crosscontaminate one food with another.  +  * Don't crosscontaminate one food with another. 
−  *Chill and refrigerate leftovers promptly.  +  * Chill and refrigerate leftovers promptly. 
−  *Clean and wash all produce.  +  * Clean and wash all produce. 
−  *Report suspected foodborne illnesses to the local health department.  +  * Report suspected foodborne illnesses to the local health department. 
−  ===Environmental Quality===  +  === Environmental Quality === 
{{Incompletetopic}}  {{Incompletetopic}}  
'''Environmental quality''' typically deals with biological, chemical, and physical causes of illness. This can include air, water or noise pollution; smoking; natural disasters (flooding, drought, etc.); effects of toxins and pesticides, and more.  '''Environmental quality''' typically deals with biological, chemical, and physical causes of illness. This can include air, water or noise pollution; smoking; natural disasters (flooding, drought, etc.); effects of toxins and pesticides, and more.  
−  ===Population Growth===  +  === Population Growth === 
{{Incompletetopic}}  {{Incompletetopic}}  
−  Population growth follows factors that have come out of the growing world population, and what larger organizations have done to help. It also talks about relevant epidemics (like the flu) that have come out of population growth.  +  Population growth follows factors that have come out of the growing world population, and what larger organizations have done to help. It also talks about relevant epidemics (like the flu) that have come out of population growth. 
−  ==Statistics==  +  == Statistics == 
For Division C, statistics is a crucial part of the event (even though the rules specify that it should be less than 10% of the test material). Understanding statistics can be the difference between a good disease detective and an ''excellent'' disease detective. However, many disease detectives only make an effort to know the formulas that compute certain statistical measures without delving into the deeper (highly interesting!) meaning of statistics.  For Division C, statistics is a crucial part of the event (even though the rules specify that it should be less than 10% of the test material). Understanding statistics can be the difference between a good disease detective and an ''excellent'' disease detective. However, many disease detectives only make an effort to know the formulas that compute certain statistical measures without delving into the deeper (highly interesting!) meaning of statistics.  
−  ===Basics===  +  === Basics === 
This is a crash course on the fundamentals of statistics. This is not a replacement for reading (and understanding) the SOINC guide on statistics in this event or better yet, taking a class or reading a textbook on statistics.  This is a crash course on the fundamentals of statistics. This is not a replacement for reading (and understanding) the SOINC guide on statistics in this event or better yet, taking a class or reading a textbook on statistics.  
−  ====Populations and Samples====  +  ==== Populations and Samples ==== 
The ''population'' is the entire set under study. For example, the length of dung beetles. Because it is impossible to measure the length of every single dung beetle on planet earth, statistics use sampling. They take a subset of the dung beetles called a ''sample'' and use measurements from the sample to make inferences about the population as a whole. A ''population parameter'' is a characteristic of a population; for example, suppose 84% of Philadelphians preferred chocolate ice cream over vanilla ice cream. A ''sample statistic'' is an attribute of a sample; for example, we randomly sampled 10 Philadelphians and found that 70% preferred chocolate ice cream over vanilla ice cream.  The ''population'' is the entire set under study. For example, the length of dung beetles. Because it is impossible to measure the length of every single dung beetle on planet earth, statistics use sampling. They take a subset of the dung beetles called a ''sample'' and use measurements from the sample to make inferences about the population as a whole. A ''population parameter'' is a characteristic of a population; for example, suppose 84% of Philadelphians preferred chocolate ice cream over vanilla ice cream. A ''sample statistic'' is an attribute of a sample; for example, we randomly sampled 10 Philadelphians and found that 70% preferred chocolate ice cream over vanilla ice cream.  
−  ====Distribution Characteristics====  +  ==== Distribution Characteristics ==== 
Distributions are characterized by center, shape, and spread.  Distributions are characterized by center, shape, and spread.  
−  =====Central Tendency=====  +  ===== Central Tendency ===== 
A central tendency is a "typical" or "middle" value for a distribution.  A central tendency is a "typical" or "middle" value for a distribution.  
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''Mode''  The most frequently occurring value in the data set. Modes are useful for describing "peaks" in a distribution.  ''Mode''  The most frequently occurring value in the data set. Modes are useful for describing "peaks" in a distribution.  
−  =====Shape=====  +  ===== Shape ===== 
''Skewedness''  Distributions that have a few extreme values on the higher side are skewed to the right. Distributions that have a few extreme values on the lower side are skewed to the left.  ''Skewedness''  Distributions that have a few extreme values on the higher side are skewed to the right. Distributions that have a few extreme values on the lower side are skewed to the left.  
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''Normal distributions''  A set of data that is unimodal, symmetrical, and continues off to infinity on both tails. Also known as a Gaussian distribution. In the normal distribution, the mean, median, and mode are all the same. Technically, the normal distribution is continuous and infinite but can be approximated with discrete values.  ''Normal distributions''  A set of data that is unimodal, symmetrical, and continues off to infinity on both tails. Also known as a Gaussian distribution. In the normal distribution, the mean, median, and mode are all the same. Technically, the normal distribution is continuous and infinite but can be approximated with discrete values.  
−  =====Variability=====  +  ===== Variability ===== 
Variability, scatter, and spread all have the same meaning: the extent to which a set of data is dispersed.  Variability, scatter, and spread all have the same meaning: the extent to which a set of data is dispersed.  
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[math]SD(x)=s=\sqrt{\dfrac{\sum(x\bar{x})^2}{n1}}[/math]  [math]SD(x)=s=\sqrt{\dfrac{\sum(x\bar{x})^2}{n1}}[/math]  
−  ''689599.7 Rule''  This rule states that 68% of the values in a normally distributed data fall within 1 SD of the mean, 95% fall within 2 SD of the mean, and 99.7% fall within 3 SD of the mean.  +  ''689599.7 Rule''  This rule states that 68% of the values in a normally distributed data fall within 1 SD of the mean, 95% fall within 2 SD of the mean, and 99.7% fall within 3 SD of the mean. 
Example: Let a data set consist of integers 1 through 10, which sum to 55. The median and mean are 5.5.  Example: Let a data set consist of integers 1 through 10, which sum to 55. The median and mean are 5.5.  
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Therefore, as a general rule, the SEM decreases as sample size increases.  Therefore, as a general rule, the SEM decreases as sample size increases.  
−  ====Correlation====  +  ==== Correlation ==== 
When two variables are revealed to have a relationship using statistical measures, the variables have a correlation. This correlation can be positive, negative, or zero. Without doing an experiment or trial, it is impossible to conclude that one variable ''causes'' another variable to act in some way. There is always the possibility of a third lurking or confounding variable that the original data does not account for. In this case, wording is extremely important. Correlation [math]\neq[/math] causation.  When two variables are revealed to have a relationship using statistical measures, the variables have a correlation. This correlation can be positive, negative, or zero. Without doing an experiment or trial, it is impossible to conclude that one variable ''causes'' another variable to act in some way. There is always the possibility of a third lurking or confounding variable that the original data does not account for. In this case, wording is extremely important. Correlation [math]\neq[/math] causation.  
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The correlation coefficient [math]r[/math] is a measure of the scatter around a linear relationship. It does NOT apply when a relationship is nonlinear. Because the correlation coefficient is difficult to calculate by hand, exam writers will typically give the value and ask for the interpretation of the [math]r[/math] value. The correlation coefficient is always [math]1<r<1[/math] and a value of 1 indicates a perfectly positively linear relationship. Conversely, a value of 0 indicates no relationship. Typically, [math]0.9<r<1[/math] is termed strong.  The correlation coefficient [math]r[/math] is a measure of the scatter around a linear relationship. It does NOT apply when a relationship is nonlinear. Because the correlation coefficient is difficult to calculate by hand, exam writers will typically give the value and ask for the interpretation of the [math]r[/math] value. The correlation coefficient is always [math]1<r<1[/math] and a value of 1 indicates a perfectly positively linear relationship. Conversely, a value of 0 indicates no relationship. Typically, [math]0.9<r<1[/math] is termed strong.  
−  ====Standardization====  +  ==== Standardization ==== 
The ''standard score'' or ''z score'' rescales the standard deviation of a normally distributed data set to 1 and mean to 0. Thus, we can model all normally distributed data using a single normal distribution with mean 0 and SD 1.  The ''standard score'' or ''z score'' rescales the standard deviation of a normally distributed data set to 1 and mean to 0. Thus, we can model all normally distributed data using a single normal distribution with mean 0 and SD 1.  
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The first formula is for a population while the second is for a sample. [math]\sigma[/math] represents the population standard deviation while [math]\mu[/math] represents the population mean.  The first formula is for a population while the second is for a sample. [math]\sigma[/math] represents the population standard deviation while [math]\mu[/math] represents the population mean.  
−  ====Infant Mortality Rate====  +  ==== Infant Mortality Rate ==== 
The infant mortality rate is the ratio of deaths to births.  The infant mortality rate is the ratio of deaths to births.  
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Rates in epidemiology are often expressed as a per1000 or per1 million, so if the infant mortality rate were 0.05, we could write that as 50 deaths per 1000 births.  Rates in epidemiology are often expressed as a per1000 or per1 million, so if the infant mortality rate were 0.05, we could write that as 50 deaths per 1000 births.  
−  ====Inference====  +  ==== Inference ==== 
Statistical inference is the process of inferring something about a population given a sample.  Statistical inference is the process of inferring something about a population given a sample.  
−  =====Confidence Intervals=====  +  ===== Confidence Intervals ===== 
Confidence intervals are used to estimate population attributes given statistics from a sample. However, confidence intervals do not take into account confounding or biases. The confidence level determines how wide the interval is. A common confidence level is 95%: "I am 95% certain that the interval captures the true population proportion/mean. This means that if the process used to obtain the interval were repeated many, many times, the interval generated would capture the true population proportion/mean 95% of the time."  Confidence intervals are used to estimate population attributes given statistics from a sample. However, confidence intervals do not take into account confounding or biases. The confidence level determines how wide the interval is. A common confidence level is 95%: "I am 95% certain that the interval captures the true population proportion/mean. This means that if the process used to obtain the interval were repeated many, many times, the interval generated would capture the true population proportion/mean 95% of the time."  
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A t table contains common values for tstar. Note that you need the number of degrees of freedom (df) to find the tstar. Generally, [math]df=n1[/math].  A t table contains common values for tstar. Note that you need the number of degrees of freedom (df) to find the tstar. Generally, [math]df=n1[/math].  
−  =====Inference Tests=====  +  ===== Inference Tests ===== 
In an inference test, we use statistical inference to determine if a statement is likely or unlikely. We first create a null hypothesis ("the default"). For example, suppose that you were investigating whether drinking the punch at the party is associated with developing salmonellosis symptoms. The null hypothesis would be that eating cabbage is not associated with developing salmonellosis symptoms. The alternative hypothesis would be that eating cabbage is associated with developing salmonellosis symptoms. You would then look at your sample (people who were at the party and did/did not drink the punch and did/did not develop salmonellosis symptoms) and ask, ''How likely is it that this result occurred by chance, i.e. if the null hypothesis were true?'' This probability is called the pvalue. Statisticians generally use a threshold of 0.05. If the pvalue is below 0.05, the result is significant, and you reject the null hypothesis. Otherwise, you fail to reject the null hypothesis.  In an inference test, we use statistical inference to determine if a statement is likely or unlikely. We first create a null hypothesis ("the default"). For example, suppose that you were investigating whether drinking the punch at the party is associated with developing salmonellosis symptoms. The null hypothesis would be that eating cabbage is not associated with developing salmonellosis symptoms. The alternative hypothesis would be that eating cabbage is associated with developing salmonellosis symptoms. You would then look at your sample (people who were at the party and did/did not drink the punch and did/did not develop salmonellosis symptoms) and ask, ''How likely is it that this result occurred by chance, i.e. if the null hypothesis were true?'' This probability is called the pvalue. Statisticians generally use a threshold of 0.05. If the pvalue is below 0.05, the result is significant, and you reject the null hypothesis. Otherwise, you fail to reject the null hypothesis.  
−  ======Error======  +  ====== Error ====== 
A ''Type I'' error occurs if you reject [math]H_o[/math] (the null hypothesis) when [math]H_o[/math] is true. The probability of a Type I error is [math]\alpha[/math], the significance level.  A ''Type I'' error occurs if you reject [math]H_o[/math] (the null hypothesis) when [math]H_o[/math] is true. The probability of a Type I error is [math]\alpha[/math], the significance level.  
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The ''power of the test'' is the probability that the null hypothesis is rejected if [math]H_o[/math] is false. The power of the test is equal to [math]1\beta[/math].  The ''power of the test'' is the probability that the null hypothesis is rejected if [math]H_o[/math] is false. The power of the test is equal to [math]1\beta[/math].  
−  ===Advanced===  +  === Advanced === 
−  ====Sensitivity and Specificity====  +  ==== Sensitivity and Specificity ==== 
Sensitivity and specificity are ways to calculate the chance of having a specific disease given you do or do not have a disease.  Sensitivity and specificity are ways to calculate the chance of having a specific disease given you do or do not have a disease.  
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The equation to use for specificity is: [math]d \over d+b[/math]  The equation to use for specificity is: [math]d \over d+b[/math]  
−  ====Chi Square====  +  ==== Chi Square ==== 
−  A chisquare is a statistical measure used to determine the difference between an expected value and an observed value. In epidemiology, it can be used to compare information from different groups (i.e. age) to a local or national average.  +  A chisquare is a statistical measure used to determine the difference between an expected value and an observed value. In epidemiology, it can be used to compare information from different groups (i.e. age) to a local or national average. 
[math]\chi^2=\sum\frac{(O−E)^2}{E}[/math]  [math]\chi^2=\sum\frac{(O−E)^2}{E}[/math]  
−  ====ZTest====  +  ==== ZTest ==== 
−  Used to compare two means when the population variances are known and the sample size is greater than 30. When [math] n > 30 [/math], the student's T distribution becomes sufficiently similar (by the Central Limit Theorem) to the Z distribution that we are able to use the Z distribution to compute the test.  +  Used to compare two means when the population variances are known and the sample size is greater than 30. When [math] n > 30 [/math], the student's T distribution becomes sufficiently similar (by the Central Limit Theorem) to the Z distribution that we are able to use the Z distribution to compute the test. 
We compute the test statistic using [math] Z = \frac{\hat{\beta}  b}{SE(\beta)} [/math], where b is the value we are testing our estimate against. The test statistic is then compared to a table of Zscores, which you can find online. The Zscore is found using a predetermined "alpha" or level of significance, which is typically 5%. If the absolute value of the test statistic is larger than the "critical value," then you reject the null hypothesis.  We compute the test statistic using [math] Z = \frac{\hat{\beta}  b}{SE(\beta)} [/math], where b is the value we are testing our estimate against. The test statistic is then compared to a table of Zscores, which you can find online. The Zscore is found using a predetermined "alpha" or level of significance, which is typically 5%. If the absolute value of the test statistic is larger than the "critical value," then you reject the null hypothesis.  
−  ====TTest====  +  ==== TTest ==== 
Used to compare two means when sample size is less than 30. The T test statistic is computed the same way as the Z test statistic is computed; however, the test statistic is compared to a table for the T distribution.  Used to compare two means when sample size is less than 30. The T test statistic is computed the same way as the Z test statistic is computed; however, the test statistic is compared to a table for the T distribution.  
−  =====Paired TTest=====  +  ===== Paired TTest ===== 
Used to compare multiple sets of data.  Used to compare multiple sets of data.  
−  ====Fischer's Exact Test====  +  ==== Fischer's Exact Test ==== 
Fischer's test searches for nonrandom associations between two categorical variables.  Fischer's test searches for nonrandom associations between two categorical variables.  
−  ====McNemar's Test====  +  ==== McNemar's Test ==== 
The McNemar Test is similar to a ChiSquare, except that it uses matched paired data.  The McNemar Test is similar to a ChiSquare, except that it uses matched paired data.  
−  ====Maentel Haenszel Test====  +  ==== Maentel Haenszel Test ==== 
The CochranMaentelHaenszel Test aims to find the association between variables while controlling for confounding.  The CochranMaentelHaenszel Test aims to find the association between variables while controlling for confounding.  
−  ====ANOVA====  +  ==== ANOVA ==== 
The analysis of variance test, or ANOVA, is a statistical measure used to compare variances of two or more samples.  The analysis of variance test, or ANOVA, is a statistical measure used to compare variances of two or more samples.  
−  ==Resources==  +  == Resources == 
:[https://www.lulu.com/en/us/shop/stephaniewang/epidemiologyunmasked/paperback/productwq55gp.html/ Epidemiology Unmasked Textbook]  :[https://www.lulu.com/en/us/shop/stephaniewang/epidemiologyunmasked/paperback/productwq55gp.html/ Epidemiology Unmasked Textbook]  
:[http://seer.cancer.gov/training/manuals/ Cancer Epidemiology Instruction Manual]  :[http://seer.cancer.gov/training/manuals/ Cancer Epidemiology Instruction Manual]  
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{{Life Science Event}}  {{Life Science Event}}  
{{2021Events}}  {{2021Events}}  
+  
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Latest revision as of 06:30, 5 February 2021
Disease Detectives  

Type  Life Science  
Category  Study  
Event Information  
Latest Appearance  2021  
Forum Threads  
 
 
 
 
Question Marathon Threads  
 
 
 
Official Resources  
Division B Website  www  
Division C Website  www  
Division B Results  
 
Division C Results  

Disease Detectives is an event in Division B and Division C that focuses on epidemiology, the study of diseases and how they spread.
Contents
Focus Topics
Disease Detectives rotates between topics every two years. Typically the topic has a minor impact on the content of the event, usually only affecting the specific types of diseases used in problems. However, now Disease Detective includes disease from all topics. Therefore, there is no given one.
Year  Topic 

2018  Food Borne Illness 
2017  
2016  Population Growth 
2015  
2014  Environmental Quality 
2013  
2012  Food Borne Illness 
2011  
2010  Population Growth 
2009  
2008  Environmental Quality 
2007 
Event Format
The Foodborne Illness focus covers areas that include:
 Historical foodborne illness outbreaks
 Characteristics of different foodborne illnesses (salmonella, botulism, etc.)
 Safe cooking temperature for different foods
 Prevention techniques for stopping foodborne illness transmission
 Food preparation steps and safety
 Pulsenet and other national surveillance techniques for foodborne illnesses
The Population Growth focus covers areas that include:
 Water Quality, Water Pollution, Water Demands
 Sanitation Needs
 Growth of Slums and Household Environment
 Environmental Degradation
 Air Pollution
 Infectious Disease Outbreaks
 Rapid Spread of Disease via Public Transportation and Air Travel
 Food Quality and Food Contamination
 Lack of food in poor nations vs. unhealthy fast food and drinks in technological societies
 Availability of health care for the poor and the aged
 People moving into uninhabited areas
 New pathogens, such as Lyme disease and Ebola
The Basics
Epidemiology
Epidemiology is the study of distribution and determinants of healthrelated states in specified populations, and the application of this to control health problems. There are four basic reasons for why disease detectives study and research outbreaks and epidemics. These reasons are: Control and Prevention, Research Opportunities, Training, and Legal Concerns.
Two Basic Types of Epidemiology
 Classical Epidemiology  population oriented, studies community origins of health problems related to nutrition, environment, human behavior, and the psychological, social, and spiritual state of a population. The event is more aimed towards this type of epidemiology.
 Clinical Epidemiology  studies patients in health care settings in order to improve the diagnosis and treatment of various diseases and the prognosis for patients already affected by a disease. These can be further divided into:
 Infectious Disease Epidemiology  heavily dependent on laboratory support
 Chronic Disease Epidemiology  dependent on complex sampling and statistical methods
There are all sorts of classification systems for epi and the above certainly are examples. One could add research epi vs applied epi to the above list. However probably the most fundamental and common system is Descriptive epi (e.g. person, place and time) vs Analytic epi (hypothesis testing  study design).
Basic Epidemiology Terms
 Cluster  An aggregation of cases over a particular period closely grouped in time and space, regardless of whether the number is more than the expected number
 Endemic Disease  Present at a continuous level throughout a population/geographic area; constant presence of an agent/health condition within a given geographic area/population; refers to the usual prevalence of an agent/condition.
 Epidemic  Large numbers of people over a wide geographical area are affected.
 Etiology  Study of the cause of a disease.
 Fomite  A physical object that serves to transmit an infectious agent from person to person. An example of this is lice on a comb. The comb is the fomite and the lice are the agent that can make your hair itch.
 Iatrogenic An illness that is caused by a medication or physician.
 Incubation Period  Time in between when a person comes into contact with a pathogen and when they first show symptoms or signs of disease.
 Index Case  First patient in an epidemiological study (also known as patient zero or primary case).
 Latent Period  Time in between when a person comes into contact with a pathogen and when they become infected.
 Morbidity  Rate of disease in a population.
 Mortality  Rate of death in a population.
 Outbreak  More cases of a particular disease than expected in a given area or among a specialized group of people over a particular period of time.
 Pandemic  An epidemic occurring over several countries or continents and affecting a large proportion of the population.
 Plague  A serious, potentially lifethreatening infectious disease that is usually transmitted to humans by the bites of rodent fleas. It was one of the scourges of our early history. There are three major forms of the disease: bubonic, septicemic, and pneumonic.
 Nosocomial Disease  An infection that is acquired in a hospital.
 Risk  The probability that an individual will be affected by, or die from, an illness or injury within a stated time or age span. Risk of illness is generally considered to be the same as the Incidence (see below) and the terms are used interchangeably. Agespan is not usually a consideration in this usage. Risk of death from a particular illness is expressed as the Case Fatality Rate (Number deaths due to a disease/Number with the disease) or the Causespecific Mortality Rate (Number deaths due to a disease/Number in population). Age span is a more common consideration in this last usage.
 Surveillance  The systematic and ongoing collection, analysis, interpretation, and dissemination of health data. The purpose of public health surveillance is to gain knowledge of the patterns of disease, injury, and other health problems in a community so that we can work towards their prevention and control.
 Vector  An animal that transmits disease. For example, a mosquito is a vector for malaria.
 Zoonosis  An infectious disease that is transmissible from animals to humans.
 Symptomatic  Showing symptoms or signs of injury.
 Asymptomatic  Showing no signs or symptoms, although can be carrier of disease.
Incidence, Prevalence, and Duration
The incidence of an illness is the number of new instances of disease in a population over a given time period. It is expressed as "X cases/Y population/ Z time". The prevalence of an illness is the number of affected persons in the population at any given point in time. It is expressed as "X cases/Y population". There are two major ways in which prevalence is measured: period prevalence and point prevalence. Think of point prevalence as a snapshot of the population and its rate of a certain disease at a point in time while period prevalence tracks the prevalence over a certain duration. Note the only difference is that incidence (I) includes time while prevalence (P) does not. Time (D) reflects the duration of the illness or condition. If two conditions have the same incidence in a population, the one with the longer duration will have the greater prevalence. Importantly, [math]P = I*D[/math], so with two of the variables, it is possible to solve for the third.
Thirteen Steps to Investigating an Outbreak
Remember that this is a conceptual order, so steps have to be done simultaneously!
 Prepare for field work
 Establish the Existence of an Outbreak  Consider Severity, Potential for Spread, Public Concern, and Availability of Resources
 Verify the Diagnosis
 Construct a Working Case Definition
 Find Cases Systematically and Record Information
 Describe and Orient the Data in Terms of Person, Place, and Time  Descriptive Epidemiology
 Develop Hypotheses (Agent/Host/Environment Triad) = Chain of Transmission
 Evaluate Hypotheses  Analytical Studies (MUST Have a Control Group)
 Refine Hypotheses if Necessary
 Compare and Reconcile with Laboratory and/or Environmental Studies
 Implement Control and Prevention Measures (ASAP!)
 Initiate or Maintain Surveillance
 Communicate Findings
Ten Steps to Outbreak Investigation  Explanation of Steps
Five Step Process for Surveillance
 Identify, define, and measure the health problem of interest
 Collect and compile data about the problem (and if possible, factors that influence it)
 Analyze and interpret these data
 Provide these data and their interpretation to those responsible for controlling the health problem
 Monitor and periodically evaluate the usefulness and quality of surveillance to improve it for future use. Note that surveillance of a problem does not include actions to control the problem
Public Health Surveillance  CDC
How to prove x caused y, or Causation
Hill's Criteria for Cause
Nine criteria must be met to establish a causeandeffect relationship. This is commonly known as Hill's Criteria for Causation:
 Strength of Association  relationship is clear and risk estimate is high
 Consistency  observation of association must be repeatable in different populations at different times
 Specificity  a single cause produces a specific effect
 Alternative Explanations  consideration of multiple hypotheses before making conclusions about whether an association is causal or not
 Temporality  cause/exposure must precede the effect/outcome
 DoseResponse Relationship  an increasing amount of exposure increases the risk
 Biological Plausibility  the association agrees with currently accepted understanding of biological and pathological processes
 Experimental Evidence  the condition can be altered, either prevented or accelerated, by an appropriate experimental process
 Coherence  the association should be compatible with existing theory and knowledge, including knowledge of past cases and epidemiological studies
Hill's Criteria for Causation Explanations and History
Types of Carriers/Vectors
 Convalescent  Humans are also capable of spreading disease following a period of illness, typically thinking themselves cured of the disease
 Incubatory  When an individual transmits pathogens immediately following infection but prior to developing symptoms
 Chronic  Someone who can transmit a disease for a long period of time
 Genetic  has inherited a disease trait but shows no symptoms
 Transient/Temporary  Someone who can transmit an infectious disease for a short amount of time
Epidemiological Triads
Epidemiologists use two triads. The first is the foundation for descriptive epidemiology  person, place and time. The second is described in the next section.
Chain of Transmission Triad
This is another common triad, which is an altered form of the Chain of Infection described below. It is a companion to the Epidemiological Triad. It also has three components:
 An external agent
 A vector or fomite that transmits the disease
 A susceptible host for the disease
This is used to define the major points of a disease case.
Epidemiological Studies
Basic Studies
 Ecological  comparisons of geographical locations
 Cross Sectional  a survey,health questionnaire, "snapshot in time"
 CaseControl  compare people with and without disease to find common exposures
 Cohort  compare people with and without exposures to see what happens to each
 Randomized Controlled Trial  human experiment
 Quasi Experiments  research similarities with traditional experimental design or RCT, but lack element of random assignment to treatment/control
Advantages and Disadvantages to Study Designs
Study Designs  Advantages  Disadvantages 

Trial 


Cohort Study 


CaseControl Study 


CrossSectional Study 


2x2 Table
A table which has two columns and rows for people with or without exposure and with or without disease; shows the number of people with each characteristic.
Disease  No Disease  

Exposure  a  b 
No Exposure  c  d 
Using the 2*2 Table, we can calculate the odds ratio and relative risk. These calculations allow comparisons between the control group and the group afflicted with the condition. One is the neutral value and means that there is no difference between the groups compared; when the value is greater than one it means that there has been some difference between the two groups, whether it was caused by bias, chance, or an actual relationship between the exposure and outcome is yet to be seen. The Pvalue tells us whether the results of the study can be used. The Pvalue is the measure of how confident you are that your findings are correct. You can only trust your findings to be correct if the Pvalue is less than .05.
Odds Ratio  used in casecontrol study, [math]a \cdot d \over b \cdot c[/math]
Relative Risk  used in cohort study, [math]a/(a+b) \over c/(c+d)[/math]
Attack Rate  the rate that a group experienced an outcome or illness equal to the number sick divided by the total in that group. (There should be a high attack rate in those exposed and a low attack rate in those unexposed.)
 For the exposed: [math]\frac{a}{a+b}[/math]
 For the unexposed: [math]\frac{c}{c+d}[/math]
Using EpiCurves
An epicurve is a histogram that shows the course of an outbreak by plotting the number of cases of a condition according to the time of onset. EpiCurves fall into three classifications:
Point source epidemics occur when people are exposed to the same exposure over a limited, well define period of time. The shape of the curve commonly rises rapidly and contains a definite peak, followed by a gradual decline.
Continuous common source epidemics occur when the exposure to the source is prolonged over an extended period of time and may occur over more than one incubation period. The down slope of the curve may be very sharp if the common source is removed or gradual if the outbreak is allowed to exhaust itself.
Propagated (progressive source) epidemics occur when a case of disease serves later as a source of infection for subsequent cases and those subsequent cases, in turn, serve as sources for later cases. The shape of this curve usually contains a series of successively larger peaks, reflective of the increasing number of cases caused by persontoperson contact, until the pool of those susceptible is exhausted or control measures are implemented. The distance between these peaks may be a rough indication of the incubation period of the disease. As the outbreak progresses, the peaks flatten out (think of the variance around a mean over multiple generations).
Validity of Study Results: Error and Bias
 Random error is the result of fluctuations around a true value because of the sample population. Random error can result from poorly worded questions or misunderstanding of questions. As the term implies, it is random, so it is impossible to correct. However, random error can be reduced; some ways include increasing the sample size and making measurements more precise, either by using a more accurate measurement device or by taking more trials. While these techniques would decrease random error, they can also be expensive. Better measurement devices will cost more, and more trials and a larger sample size will mean more work.
 Precision is a measure of random error that is inversely related, so increasing random error decreases precision.
 Systematic error is any error other than random error. For example, systematic error can occur if the markings on your ruler are wider. This would make the numeric measurements less than what they actually are, making all data collected inaccurate. However, trends observed may still be preserved (shifting a line vertically preserves a line, as it is a rigid motion).
 Selection bias occurs when selection of participants for a study is affected by an unknown variable that is associated with the exposure and outcome being measured.
 Information bias occurs when bias is introduced through an error in measurement or observation
 An example of information bias is recall bias. When studied, some subjects may more easily recall specific habits related to a disease or condition than subjects not affected with the disease or condition.
 Confounding bias is bias resulting from mixing effects of several factors. Unlike selection and information bias, confounding bias deals with causation and not variations in study results.
Disease and Disease Transmission
Natural History and Spectrum of Disease
The process begins with the appropriate exposure to or accumulation of factors sufficient for the disease process to begin in a susceptible host. For an infectious disease, the exposure is a microorganism. For cancer, the exposure may be a factor that initiates the process, such as asbestos fibers or components in tobacco smoke (for lung cancer), or one that promotes the process, such as estrogen (for endometrial cancer).
After the disease process has been triggered, pathological changes then occur without the individual being aware of them. This stage of subclinical disease, extending from the time of exposure to onset of disease symptoms, is usually called the incubation period for infectious diseases, and the latency period for chronic diseases. During this stage, disease is said to be asymptomatic (no symptoms) or inapparent. This period may be as brief as seconds for hypersensitivity and toxic reactions to as long as decades for certain chronic diseases. Even for a single disease, the characteristic incubation period has a range. For example, the typical incubation period for hepatitis A is as long as 7 weeks. The latency period for leukemia to become evident among survivors of the atomic bomb blast in Hiroshima ranged from 2 to 12 years, peaking at 6–7 years.
The onset of symptoms marks the transition from subclinical to clinical disease. Most diagnoses are made during the stage of clinical disease. In some people, however, the disease process may never progress to clinically apparent illness. In others, the disease process may result in illness that ranges from mild to severe or fatal. This range is called the spectrum of disease. Ultimately, the disease process ends either in recovery, disability or death.
Chain of Infection
Agent leaves reservoir through portal of exit, and is conveyed by some mode of transmission, and enters the appropriate portal of entry to infect a susceptible host.
Agent  A microbial organism with the ability to cause disease.
Reservoir  A place where agents can thrive and reproduce.
Portal of Exit  A place of exit providing a way for an agent to leave the reservoir; the route a pathogen takes out of an infected host. Portals of exit tend to be fairly well defined. What serve as portals of exit are often not terribly surprising, at least, once something is known of how and where a pathogen replicates and enters new hosts. Respiratory infections tend to utilize the mouth and nose as portals of exit. Gastrointestinal diseases tend to exit in feces or saliva, depending on the site of replication. Sexually transmitted diseases tend to have portals of exit at the urethra or genital region. Bloodbourne diseases tend to exit via arthropods, needles, bleeding, or hyperdermic syringes. A more general portal of exit occurs when an infected animal is butchered or an infected person undergoes surgery. The three most common portals of exit are the skin, gastrointestinal tract, and respiratory tract.
Mode of Transmission  Method of transfer by which the organism moves or is carried from one place to another; the transfer of diseasecausing microrganisms from one environment to another, particularly from an external environment to a susceptible individual. There are three general categories of transmission: contact, vehicle, and vector.
Portal of Entry  An opening allowing the microorganism to enter the host; the route a pathogen takes to enter a host. Just as with the portals of exit, many pathogens have preferred portals of entry. Many pathogens are not able to cause disease if their usual portal of entry is artificially bypassed. The most common portal of entry is the mucous membrane of the respiratory tract.
Susceptible Host  A person who cannot resist a microorganism invading the body, multiplying, and resulting in infection.
Chain of Infection: Diagram and Explanation
Characteristics of Agents
 Infectivity  capacity to cause infection in a susceptible host
 Pathogenicity  capacity to cause disease in a host
 Virulence  severity of disease that the agent causes to host
Modes of Disease Transmission
Contact Transmission  subcategories include direct (persontoperson), indirect (fomite), or droplet.
 Direct Contact  occurs through touching, kissing, dancing, etc . To prevent direct contact transmission, wear gloves and masks, etc.
 Indirect Contact  occurs from a reservoir via inanimate objects called fomites. Fomites are basically almost anything an infected individual or reservoir can touch, upon which can be left a residue of contagious pathogen. Exceptions include the various inanimates ferred to as vehicles: food, air, and liquids. Typically, it is more difficult to avoid indirect contact transmission than it is to avoid direct contact transmission. A certain degree of organismal durability may be necessary to survive passage on a fomite. The best way to prevent indirect contact transmission is by avoiding contact with fomites, avoiding contact of hands with mucous membranes, especially when handling or potentially handling fomites, the use of barriers when handling fomites, and disinfecting fomites before handling.
 Droplet Transmission  consequence of being coughed, sneezed, or spit on. To be considered droplet transmission, mucous droplets must still be traveling with the velocity imparted on it leaving the mouth. As a rule of thumb, this is up to one meter after exiting the mouth. Any further and this is considered airborne transmission. Given interaction within one meter of people is certainly more difficult to avoid droplet transmission than it is to avoid either direct or indirect transmission. Not surprisingly, it is especially respiratory diseases that are transmitted by droplets.
Vehicle Transmission  transmission via a medium such as food, air, and liquid, which are all routinely taken into the body, and thus serve as vehicles into the body.
 Airborne Transmission  occurs via droplets (typically mucous droplets) where droplets are liquids that remain airborne whether as aerosols (very small droplets) or associated with dust particles. An example is within airliners where economizing measures reduces the turnover of cabin air and consequently increases air recycling. Organisms which can find their way into the air and remain viable thus have repeated opportunities to infect passengers. It requires greater organismal durability that droplet transmission simply because of the length of time the microorganism is exposed to the air, before infecting a new host, is longer. Increased durability is to the effects of desiccation, exposure to sunlight, etc. This is why breathing does not typically result in the acquisition of disease.
 Foodborne Transmission  any number of pathogens are found in food and not killed during processing may be transmitted via food product. Salmonella especially tends to be part of the normal flora of chickens and consequently associated with chicken products.
 Waterborne Transmission  fecal contaminated water. Generally, this is via sewage contaminated water supplies. It is especially gastrointestinal pathogens that are present in feces and therefore which rely on this type of transmission.
Vector Transmission  no entry.
 Portals of Entry to the Nervous System  the brain is typically fairly resistant to bacterial infection. There are four common portals of entry to the nervous system. For an organism to take advantage of these routes, they must display increasingly specialized adaptations as read from first to last: parenteral, via the blood, via the lymphatic systems, and up the peripheral nerve axons. Ordering of blood and lymphatic system was arbitrary and not intended to imply that one serves as a significantly more difficult portal to take advantage of than the other.
The scheme used by the American Public Health Association and CDC (Principles of Epi, 3rd edition) is a bit different. The 2 main categories are Direct and Indirect Transmission (not Contact). Direct Transmission includes Direct Contact and Droplet Spread. Examples of direct contact includes things like kissing, biting, and contact with soil containing infectious agents that penetrate the skin or enter wounds. Droplet spread is essentially an "in your face sneeze or cough". The idea is up close and immediate.
Indirect Transmission includes Airborne, Vehicles and Vectors. Airborne transmission involves dust or droplet nuclei (the latter are essentially little (<5 micron) particles that remain suspended in the air. Time and distance are both greater than for droplet spread (distance >68 ft). Vehicles include things like food, water, or fomites. Vehicles may passively carry pathogens or may promote growth or toxin production. Vectors are arthropods (e.g. mosquitoes, flies, lice, ticks) that spread infectious agents. If the agent multiplies or undergoes a change in life stage (as with malaria) within the vector, the vector is said to be a Biologic Vector. If the agent is simply carried from one place to another (think of a fly landing on feces and then a bowl of potato salad) it is a Mechanical Vector. Generally vectorborne diseases are thought of only in the context of biologic vectors. Rabies from a dog bite would be direct contact, not a vector. Note that while terms like foodborne, waterborne and zoonotic are not really included in this system  they are still valid.
Disease Prevention
For prevention strategies relating to the yearly topics, please see Disease Detectives#Yearly Topics.
 Primary prevention  early intervention to avoid initial exposure to agent of disease preventing the process from starting
 Secondary prevention  during the latent stage (when the disease has just begun), process of screening and instituting treatment may prevent progression to symptomatic disease
 Tertiary prevention  during the symptomatic stage (when the patient shows symptoms), intervention may arrest, slow, or reverse the progression of disease
 Quaternary prevention  set of health activities to mitigate or avoid consequences of unnecessary/excessive intervention of the health system. Social credit that legitimizes medical intervention may be damaged if doctors don't prevent unnecessary medical activity and its consequences.
In Disease Detectives scenarios, event supervisors will often ask you to brainstorm disease prevention methods. Even if you know very little about the disease, you can brainstorm ideas from the chain of infection for the disease. For example, if the chain of infection describes that a disease is comes in contact with humans through sand at the beach and enters the body through any openings (mouth, nose, etc.), a prevention method could be putting up signs at beaches reminding the public to wash their hands before consuming any food.
Immunity
 Active Immunity occurs when the person is exposed to a live pathogen, develops the disease, and becomes immune as a result of the primary immune response
 Passive Immunityshortterm immunization by the injection of antibodies, such as gamma globulin, that are not produced by the recipient's cells. Naturally acquired passive immunity occurs during pregnancy, in which certain antibodies are passed from the maternal into the fetal bloodstream.
 Herd Immunity protecting a whole community from disease by immunizing a critical mass of its populace. Vaccination protects more than just the vaccinated person. By breaking the chain of an infection’s transmission, vaccination can also protect people who haven’t been immunized. But to work, this protection requires that a certain percentage of people in a community be vaccinated.
Yearly Topics
Bear in mind that Disease Detectives no longer focuses on one topic; rather all topics are used in tests!
Foodborne Illness
Here are lists of foodborne illnesses, and other important information regarding foodborne illnesses: List You should know that this year, specific diseases are not included in tests and competitions!
FAT TOM
Is a device to describe the six favorable conditions required for the growth of foodborne pathogens. It is an acronym for food, acidity, time, temperature, oxygen, and moisture.
F  Food  There are sufficient nutrients available that promote the growth of microorganisms. Proteinrich foods, such as meat, milk, eggs, and fish are the most susceptible. 

A  Acidity  Foodborne pathogens require a slightly acidic pH level of 4.67.5, while they thrive in conditions with a pH of 6.67.5. The United States Food and Drug Administration's (FDA) regulations for acid/acidified foods require that the food is to be brought to pH 4.5 or below. 
T  Time  Food should be removed from "the danger zone" (see below) within twofour hours, either by cooling or heating. While most guidelines state two hours, a few indicate four hours is still safe. 
T  Temperature  Foodborne pathogens grow best in temperatures between 41 to 135 °F (5 to 57 °C), a range referred to as the temperature danger zone (TDZ). They thrive in temperatures that are between 70 to 104 °F (21 to 40 °C). 
O  Oxygen  Almost all foodborne pathogens are aerobic, that is requiring oxygen to grow. Some pathogens, such as Clostridium botulinum, the source of botulism, are anaerobic. 
M  Moisture  Water is essential for the growth of foodborne pathogens, water activity (aw) is a measure of the water available for use and is measured on a scale of 0 to 1.0. Foodborne pathogens grow best in foods that have aw between 0.95 and 1.0. FDA regulations for canned foods require aw of 0.85 or below. 
Prevention
For Food Borne Illnesses, prevention tactics include:
 Cook meat, poultry, and eggs thoroughly.
 Don't crosscontaminate one food with another.
 Chill and refrigerate leftovers promptly.
 Clean and wash all produce.
 Report suspected foodborne illnesses to the local health department.
Environmental Quality
This topic is incomplete. 
Environmental quality typically deals with biological, chemical, and physical causes of illness. This can include air, water or noise pollution; smoking; natural disasters (flooding, drought, etc.); effects of toxins and pesticides, and more.
Population Growth
This topic is incomplete. 
Population growth follows factors that have come out of the growing world population, and what larger organizations have done to help. It also talks about relevant epidemics (like the flu) that have come out of population growth.
Statistics
For Division C, statistics is a crucial part of the event (even though the rules specify that it should be less than 10% of the test material). Understanding statistics can be the difference between a good disease detective and an excellent disease detective. However, many disease detectives only make an effort to know the formulas that compute certain statistical measures without delving into the deeper (highly interesting!) meaning of statistics.
Basics
This is a crash course on the fundamentals of statistics. This is not a replacement for reading (and understanding) the SOINC guide on statistics in this event or better yet, taking a class or reading a textbook on statistics.
Populations and Samples
The population is the entire set under study. For example, the length of dung beetles. Because it is impossible to measure the length of every single dung beetle on planet earth, statistics use sampling. They take a subset of the dung beetles called a sample and use measurements from the sample to make inferences about the population as a whole. A population parameter is a characteristic of a population; for example, suppose 84% of Philadelphians preferred chocolate ice cream over vanilla ice cream. A sample statistic is an attribute of a sample; for example, we randomly sampled 10 Philadelphians and found that 70% preferred chocolate ice cream over vanilla ice cream.
Distribution Characteristics
Distributions are characterized by center, shape, and spread.
Central Tendency
A central tendency is a "typical" or "middle" value for a distribution.
Mean  Average of all of the values. [math]A=\dfrac{a_{1}+a_{2}+a_{3}+...+a_{n}}{n}[/math] Means should not be used if the population is very skewed, as means are easily affected by extreme values.
Median  The middle value that separates the data into two halves. Medians are not as affected by extreme values, e.g. the mean number of arms per person in the world is less than 2, but the median is exactly 2.
Mode  The most frequently occurring value in the data set. Modes are useful for describing "peaks" in a distribution.
Shape
Skewedness  Distributions that have a few extreme values on the higher side are skewed to the right. Distributions that have a few extreme values on the lower side are skewed to the left.
Peaks  If a distribution has no peaks, it is uniform. If it has one peak, it is unimodal. If it has two peaks, it is bimodal.
Normal distributions  A set of data that is unimodal, symmetrical, and continues off to infinity on both tails. Also known as a Gaussian distribution. In the normal distribution, the mean, median, and mode are all the same. Technically, the normal distribution is continuous and infinite but can be approximated with discrete values.
Variability
Variability, scatter, and spread all have the same meaning: the extent to which a set of data is dispersed.
Range  The difference between the largest and smallest values in a set. It is not very useful except to get a sense of the possible spread of a distribution.
Interquartile Range (IQR)  The difference between the 75th (third quartile, or [math]Q_{3}[/math]) and 25th (first quartile or [math]Q_{1}[/math]) percentiles of a data set. To find [math]Q_{1}[/math] and [math]Q_{3}[/math], find the median of the data set, then divide the data set into two new sets, one with the data from the median up to the maximum and the other with the data from the median down to the minimum. The median values of the two new sets are [math]Q_{1}[/math] and [math]Q_{3}[/math]. The IQR is used with the median and is the most robust measure of variability, i.e. outliers do not affect the IQR as much. [math]IQR=Q_{3}Q_{1}[/math]
Variance  Average of the squared differences from the mean. The variance gives a very vague sense of how far apart the values in a data set are compared to the mean. [math]Var(x)=\dfrac{\sum(x\bar{x})^2}{n1}[/math]
Standard Deviation (SD)  The square root of the variance. Quantifies the spread in a data set in the same units as the original data. Standard deviation is, in a sense, the average distance away from the mean. A low SD indicates that the data tends to be close to the mean and a high SD indicates the data is far away from the mean. SD and variance are used with the mean. Unlike IQR, SD is not resistant to outliers.
[math]SD(x)=s=\sqrt{\dfrac{\sum(x\bar{x})^2}{n1}}[/math]
689599.7 Rule  This rule states that 68% of the values in a normally distributed data fall within 1 SD of the mean, 95% fall within 2 SD of the mean, and 99.7% fall within 3 SD of the mean.
Example: Let a data set consist of integers 1 through 10, which sum to 55. The median and mean are 5.5.
To find the IQR, we can divide the data into two sets, one from 1 through 5 and the other from 6 through 10 inclusive. We find the median for each of these sets (3 and 8) and then subtract them. Thus, the IQR is 5.
To find the SD, we need to calculate the difference of each data value from the mean. Then we square the differences, add them, divide it by the sample size  1 [math](n=10, n1=9)[/math] and square root the result.
[math]SD(x)=\sqrt{\dfrac{(15.5)^2+(25.5)^2+\cdots+(105.5)^2}{9}}=2.87[/math]
Note that this population is uniform (each possibility has the same frequency of occurring), so the 689599.7 rule for normal distributions does not apply. If it did apply, 68% of the data would fall in between the interval [math](5.52.87, 5.5+2.87)=(2.63, 8.37)[/math].
Standard Error of the Mean (SEM)  The SEM measures the variability of the mean of different samples around the population mean.
[math]SE_{\bar{x}}=\dfrac{s}{\sqrt{n}}[/math]
Therefore, as a general rule, the SEM decreases as sample size increases.
Correlation
When two variables are revealed to have a relationship using statistical measures, the variables have a correlation. This correlation can be positive, negative, or zero. Without doing an experiment or trial, it is impossible to conclude that one variable causes another variable to act in some way. There is always the possibility of a third lurking or confounding variable that the original data does not account for. In this case, wording is extremely important. Correlation [math]\neq[/math] causation.
The correlation coefficient [math]r[/math] is a measure of the scatter around a linear relationship. It does NOT apply when a relationship is nonlinear. Because the correlation coefficient is difficult to calculate by hand, exam writers will typically give the value and ask for the interpretation of the [math]r[/math] value. The correlation coefficient is always [math]1<r<1[/math] and a value of 1 indicates a perfectly positively linear relationship. Conversely, a value of 0 indicates no relationship. Typically, [math]0.9<r<1[/math] is termed strong.
Standardization
The standard score or z score rescales the standard deviation of a normally distributed data set to 1 and mean to 0. Thus, we can model all normally distributed data using a single normal distribution with mean 0 and SD 1.
[math]z=\dfrac{x\mu}{\sigma}=\dfrac{x\bar{x}}{s}[/math]
The first formula is for a population while the second is for a sample. [math]\sigma[/math] represents the population standard deviation while [math]\mu[/math] represents the population mean.
Infant Mortality Rate
The infant mortality rate is the ratio of deaths to births.
Rates in epidemiology are often expressed as a per1000 or per1 million, so if the infant mortality rate were 0.05, we could write that as 50 deaths per 1000 births.
Inference
Statistical inference is the process of inferring something about a population given a sample.
Confidence Intervals
Confidence intervals are used to estimate population attributes given statistics from a sample. However, confidence intervals do not take into account confounding or biases. The confidence level determines how wide the interval is. A common confidence level is 95%: "I am 95% certain that the interval captures the true population proportion/mean. This means that if the process used to obtain the interval were repeated many, many times, the interval generated would capture the true population proportion/mean 95% of the time."
Confidence Intervals for Proportions  Used to define a range of values within which a proportion may lie.
[math]\hat{p}\pm z^{*}\sqrt{\frac{\hat{p}(1\hat{p})}{n}}[/math]
A z table contains common values for zstar.
Confidence Intervals of Means  Used to define a range of values within which a mean may lie.
[math]\bar{x}\pm t^{*}\frac{s}{\sqrt{n}}[/math]
A t table contains common values for tstar. Note that you need the number of degrees of freedom (df) to find the tstar. Generally, [math]df=n1[/math].
Inference Tests
In an inference test, we use statistical inference to determine if a statement is likely or unlikely. We first create a null hypothesis ("the default"). For example, suppose that you were investigating whether drinking the punch at the party is associated with developing salmonellosis symptoms. The null hypothesis would be that eating cabbage is not associated with developing salmonellosis symptoms. The alternative hypothesis would be that eating cabbage is associated with developing salmonellosis symptoms. You would then look at your sample (people who were at the party and did/did not drink the punch and did/did not develop salmonellosis symptoms) and ask, How likely is it that this result occurred by chance, i.e. if the null hypothesis were true? This probability is called the pvalue. Statisticians generally use a threshold of 0.05. If the pvalue is below 0.05, the result is significant, and you reject the null hypothesis. Otherwise, you fail to reject the null hypothesis.
Error
A Type I error occurs if you reject [math]H_o[/math] (the null hypothesis) when [math]H_o[/math] is true. The probability of a Type I error is [math]\alpha[/math], the significance level.
A Type II error occurs if you fail to reject [math]H_o[/math] when [math]H_o[/math] is false ([math]H_a[/math] is true). The probability of a Type II error is represented by the letter [math]\beta[/math].
The power of the test is the probability that the null hypothesis is rejected if [math]H_o[/math] is false. The power of the test is equal to [math]1\beta[/math].
Advanced
Sensitivity and Specificity
Sensitivity and specificity are ways to calculate the chance of having a specific disease given you do or do not have a disease.
Has disease  Has no disease  

People who test positive  a  b 
People who test negative  c  d 
Sensitivity is the chance of testing positive if you do have the disease. The equation to use for sensitivity is: [math]a \over a+c[/math]
Specificity is the chance of testing negative if you do not have the disease. The equation to use for specificity is: [math]d \over d+b[/math]
Chi Square
A chisquare is a statistical measure used to determine the difference between an expected value and an observed value. In epidemiology, it can be used to compare information from different groups (i.e. age) to a local or national average. [math]\chi^2=\sum\frac{(O−E)^2}{E}[/math]
ZTest
Used to compare two means when the population variances are known and the sample size is greater than 30. When [math] n > 30 [/math], the student's T distribution becomes sufficiently similar (by the Central Limit Theorem) to the Z distribution that we are able to use the Z distribution to compute the test.
We compute the test statistic using [math] Z = \frac{\hat{\beta}  b}{SE(\beta)} [/math], where b is the value we are testing our estimate against. The test statistic is then compared to a table of Zscores, which you can find online. The Zscore is found using a predetermined "alpha" or level of significance, which is typically 5%. If the absolute value of the test statistic is larger than the "critical value," then you reject the null hypothesis.
TTest
Used to compare two means when sample size is less than 30. The T test statistic is computed the same way as the Z test statistic is computed; however, the test statistic is compared to a table for the T distribution.
Paired TTest
Used to compare multiple sets of data.
Fischer's Exact Test
Fischer's test searches for nonrandom associations between two categorical variables.
McNemar's Test
The McNemar Test is similar to a ChiSquare, except that it uses matched paired data.
Maentel Haenszel Test
The CochranMaentelHaenszel Test aims to find the association between variables while controlling for confounding.
ANOVA
The analysis of variance test, or ANOVA, is a statistical measure used to compare variances of two or more samples.